BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0013.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309741|ref|YP_003773833.1| periplasmic protein TonB, links...   532   e-152

>gi|300309741|ref|YP_003773833.1| periplasmic protein TonB, links
           inner and outer membranes [Herbaspirillum seropedicae
           SmR1]
          Length = 307

 Score =  532 bits (1370), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/293 (85%), Positives = 277/293 (94%)

Query: 1   VNLFAQHRLLSVALGISLLVHGLLLAVHFAAPDAFRFKPSDPELEVILVNAKHDKKPVNA 60
           VN FAQHRLLSVALG+SLLVHGL+LAVHFAAPDAFR KPSDP+LEVILVNAKHDKKPVNA
Sbjct: 15  VNPFAQHRLLSVALGVSLLVHGLMLAVHFAAPDAFRLKPSDPDLEVILVNAKHDKKPVNA 74

Query: 61  QALAQANLDGGGNADDGRARSPLPDMQHVESGDSVKAAQRKVAELEQQQRKMLAQLQEAR 120
           QALAQANLDGGGNA+DGRA+SPLPDMQ V+SGDSVKAAQRKV ELEQQQR+M+AQL++++
Sbjct: 75  QALAQANLDGGGNAEDGRAKSPLPDMQRVDSGDSVKAAQRKVVELEQQQRRMMAQLKQSQ 134

Query: 121 QHVASAEQQKPVETPQPNARDLTETAKAMARMEAELAKDIAQYNKRPKKTQITPSTREVG 180
           QHVASAEQQK  E PQ NARD+ ETA+AMARMEAE+A+DI QYNKRPKKTQITPSTREVG
Sbjct: 135 QHVASAEQQKQTEAPQLNARDMIETARAMARMEAEVARDIEQYNKRPKKTQITPSTREVG 194

Query: 181 YAQYFKALQDKIEKVGTLNFPTRDGKKLYGELLVVIPVFQDGSIYERDGGVVVRTSSGNA 240
           YAQY+K LQDKIEKVGTLNFPT+DGKKLYGELL+VIPVFQDGSIYERDGGVVV++SSGNA
Sbjct: 195 YAQYYKTLQDKIEKVGTLNFPTKDGKKLYGELLIVIPVFQDGSIYERDGGVVVKSSSGNA 254

Query: 241 ALDQAAVAIVRRSVPFGRFPENMRTSGKDDVWEVIVTFRFTRDQGVQAELGAG 293
           ALDQAAVAIVRRS PFGRFP+NMRT G+DDVWE+I  FRFTRDQG+QA+LG G
Sbjct: 255 ALDQAAVAIVRRSAPFGRFPDNMRTGGRDDVWEIITRFRFTRDQGLQAQLGGG 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 753,390
Number of extensions: 27137
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)