BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0007.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembra...   296   6e-82
gi|300313955|ref|YP_003778047.1| thioredoxin protein [Herbaspiri...    55   4e-09

>gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  296 bits (758), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 138/155 (89%), Positives = 149/155 (96%)

Query: 13  GVGVYASHRANPPASPETQALNKLLSQSMPDASGQTQSLAQYKGKPLVVNFWATWCGPCV 72
           G+G+YASHRA+P  S ETQALN+LL+QS+PDA+GQ QSLAQY+GKPL+VNFWATWCGPCV
Sbjct: 19  GIGLYASHRAHPAESAETQALNRLLAQSLPDATGQMQSLAQYRGKPLIVNFWATWCGPCV 78

Query: 73  EEMPELTALQQEIAPVQILGIGVDSQENIAKFAQKYQIRYPLFVAGTGATDLLRQFGNQA 132
           EEMPELTALQQEIAPVQILGIGVDSQENI KFAQKYQIRYPLFVAGTGATDLLRQFGNQA
Sbjct: 79  EEMPELTALQQEIAPVQILGIGVDSQENIGKFAQKYQIRYPLFVAGTGATDLLRQFGNQA 138

Query: 133 GGLPFTALVGKDGNVKKVYLGRIKFDELRADLSQL 167
           GGLPFTALVGKDGNVKK+YLGR+KFDELR DLSQL
Sbjct: 139 GGLPFTALVGKDGNVKKIYLGRLKFDELRQDLSQL 173


>gi|300313955|ref|YP_003778047.1| thioredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 45  SGQTQSLAQYKGKPLVVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVDSQENIAKF 104
            GQ  +L   +GK ++VNFWAT C  CV EMP++     +     +  + V    +   +
Sbjct: 48  DGQQVNLKDLRGKVVMVNFWATSCTTCVGEMPQMIDTYNKFKDRGLDFVAVAMSYDPPNY 107

Query: 105 AQKY--QIRYPLFVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKVYLGRIKFDELR 161
              Y    + P  VA      L + FG+     P T ++ K GN+ K Y+G  +F EL 
Sbjct: 108 VLNYTETRKLPFKVALDPQDTLAKAFGD-VKLTPTTFVIDKQGNIIKRYVGEPQFAELH 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 498,581
Number of extensions: 20517
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)