BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0006.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309730|ref|YP_003773822.1| biotin carboxyl carrier protein...   157   2e-40
gi|300309731|ref|YP_003773823.1| 3-dehydroquinate dehydratase [H...    92   2e-20
gi|300313398|ref|YP_003777490.1| biotin carboxyl carrier protein...    63   1e-11

>gi|300309730|ref|YP_003773822.1| biotin carboxyl carrier protein of
           acetyl-CoA carboxylase (BCCP)protein [Herbaspirillum
           seropedicae SmR1]
          Length = 157

 Score =  157 bits (398), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/78 (97%), Positives = 76/78 (97%)

Query: 73  EGYIVKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIEAMKLLNEIDADKGGVVKQI 132
           EGYIVKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIEAMKLLNEID DKGGVVKQI
Sbjct: 80  EGYIVKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIEAMKLLNEIDTDKGGVVKQI 139

Query: 133 LVENGQAVEFGQPLFVLG 150
           LVENGQ VEFGQPLFVLG
Sbjct: 140 LVENGQPVEFGQPLFVLG 157


>gi|300309731|ref|YP_003773823.1| 3-dehydroquinate dehydratase
          [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score = 92.4 bits (228), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/65 (92%), Positives = 61/65 (93%)

Query: 1  MAKQLLLLNGPNLNLLGTREPEVYGSTTLADIEQRAQEQARAAGATLATFQSNHEGALID 60
          MAKQLLLLNGPNLNLLGTREP VYGSTTLADIEQRAQEQARAAGA+L  FQSNHEGALID
Sbjct: 1  MAKQLLLLNGPNLNLLGTREPAVYGSTTLADIEQRAQEQARAAGASLVAFQSNHEGALID 60

Query: 61 RIHXA 65
          RIH A
Sbjct: 61 RIHQA 65


>gi|300313398|ref|YP_003777490.1| biotin carboxyl carrier protein
           [Herbaspirillum seropedicae SmR1]
          Length = 82

 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 46/73 (63%)

Query: 77  VKSPMVGTFYRSSAPGAPAFVEVGKEVKEGDTLCIIEAMKLLNEIDADKGGVVKQILVEN 136
           V+SP+ GTFYR S+P AP + E G+ ++ G  + +IE MK   E+ A+ GG ++   V N
Sbjct: 6   VQSPLPGTFYRRSSPDAPPYAEAGELIEAGRVIGLIEVMKQFTELQAEHGGKLQAFHVGN 65

Query: 137 GQAVEFGQPLFVL 149
           G  VE GQ + V+
Sbjct: 66  GDPVEPGQLVAVI 78


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 408,545
Number of extensions: 15606
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 3
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 126 (53.1 bits)