BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0002.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309726|ref|YP_003773818.1| sugar kinase ribokinase family ...   600   e-173

>gi|300309726|ref|YP_003773818.1| sugar kinase ribokinase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  600 bits (1547), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 287/310 (92%), Positives = 296/310 (95%)

Query: 1   MSSLICGSLAYDNIMQYEGRFAEALLADQLHKVNVSFLVPTMRREFGGCAGNIAYNLKLL 60
           MSSLICGSLAYDNIMQYEGRFAEALLADQLHKVNVSFLVPTMRREFGGCAGNIAYNLKLL
Sbjct: 1   MSSLICGSLAYDNIMQYEGRFAEALLADQLHKVNVSFLVPTMRREFGGCAGNIAYNLKLL 60

Query: 61  GGEPIVMATVGLDSAPYMERFAALDISTRCVRQIESSFTAQCFITTDADSNQITAFHPGA 120
           GG+P++MATVGLDSAPY+ERFA L ISTRCVRQI+SSFTAQCFITTDADSNQITAFHPGA
Sbjct: 61  GGDPVIMATVGLDSAPYLERFAELGISTRCVRQIDSSFTAQCFITTDADSNQITAFHPGA 120

Query: 121 MTWSHENKVADAGAVKFAIVAPDGRDGMLQHAQQAAELKIPLIFDPGQGMPMFDGNDLKN 180
           MTWSHENKVADAG VKFAIVAPDGRDGMLQHAQQAAEL IPLIFDPGQGMPMFDG DLKN
Sbjct: 121 MTWSHENKVADAGPVKFAIVAPDGRDGMLQHAQQAAELNIPLIFDPGQGMPMFDGEDLKN 180

Query: 181 FIDLATYVAVNDYEAELLTARTGLSLAQIAERVTALVVTRGELGADIFVDGKHHAIPCVK 240
           FIDLATYVAVNDYEAELLTARTGLSLAQIAER  AL+VTRGELGADIF  GK   IPCV 
Sbjct: 181 FIDLATYVAVNDYEAELLTARTGLSLAQIAERTKALIVTRGELGADIFEGGKKFDIPCVP 240

Query: 241 ADKIADPTGCGDAFRAGMLFGLTEGYDWETTGRLASLMGSIKIASQGPQNHAPSKAEIEE 300
           AD+IADPTGCGDAFRAGMLFGLTEGYDWETTGRLASLMGS+KIASQGPQNHAPS+AEIEE
Sbjct: 241 ADRIADPTGCGDAFRAGMLFGLTEGYDWETTGRLASLMGSLKIASQGPQNHAPSRAEIEE 300

Query: 301 RFHKAFGYRF 310
           RFH AFGYRF
Sbjct: 301 RFHAAFGYRF 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 985,329
Number of extensions: 42043
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)