BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0128.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310435|ref|YP_003774527.1| prolipoprotein diacylglyceryl t...   481   e-137

>gi|300310435|ref|YP_003774527.1| prolipoprotein diacylglyceryl
           transferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 278

 Score =  481 bits (1238), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/273 (89%), Positives = 248/273 (90%), Gaps = 19/273 (6%)

Query: 1   MPDPIAIHIGPLAVHWYGLMYLLAFAQFIALGRLRIKQPHIAAVGWKKEDLDDMLFYGVL 60
           MPDPIA+HIGPLAVHWYGLMYLLAFAQFIALGRLRIKQPHIAAVGWKKEDLDDMLFYGVL
Sbjct: 6   MPDPIAVHIGPLAVHWYGLMYLLAFAQFIALGRLRIKQPHIAAVGWKKEDLDDMLFYGVL 65

Query: 61  GVVLGGRLGEILFYNPAYYFAHPADMIAVWKGGMSFHGGFLGVMLAMYLWGRKRGRNLMD 120
           GVVLGGRLGEILFYNPAYYFAHPADMIAVWKGGMSFHGGFLGVMLAMYLWGRKRGRNLMD
Sbjct: 66  GVVLGGRLGEILFYNPAYYFAHPADMIAVWKGGMSFHGGFLGVMLAMYLWGRKRGRNLMD 125

Query: 121 IMDFIAPMVPLGYAAXEV-------------------SMIWPNVDNIPRHPSPIYQMLVD 161
           IMDFIAPMVPLGYAA  +                   +MIWPNVDNIPRHPSPIYQMLVD
Sbjct: 126 IMDFIAPMVPLGYAAGRLGNFINAELPGRPADPSLPWAMIWPNVDNIPRHPSPIYQMLVD 185

Query: 162 GILLFIILWIFSRHSRPRMAVAGMFSLLYGCARFFTEYFRVPDYEVHFGGITISAGQMLS 221
           GILLFIILWIFSRHSRPRMAVAGMFSLLYGCARFFTEYFRVPDYEVHFGGITISAGQMLS
Sbjct: 186 GILLFIILWIFSRHSRPRMAVAGMFSLLYGCARFFTEYFRVPDYEVHFGGITISAGQMLS 245

Query: 222 VPMIVLGIILLVLAYRLRQQAQAPVEPAVVAKN 254
           VPMIVLGIILLVLAYRLRQQAQAP EPA+  K 
Sbjct: 246 VPMIVLGIILLVLAYRLRQQAQAPAEPALAGKK 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.147    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 774,243
Number of extensions: 30709
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)