BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0120.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310431|ref|YP_003774523.1| glucose-6-phosphate 1-dehydroge...   853   0.0  

>gi|300310431|ref|YP_003774523.1| glucose-6-phosphate
           1-dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 488

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/431 (95%), Positives = 421/431 (97%)

Query: 1   VEKDSKPHVPAANLDASVWDRFTNRLQYASVNAKEADSFSHLKEALREVDGLARVFYLAT 60
           VEKDSKPHVPAANLD +VW+RF NRLQYASVNAK+  SF HLKEALR+ +GLARVFYLAT
Sbjct: 58  VEKDSKPHVPAANLDKAVWERFCNRLQYASVNAKDGASFVHLKEALRDTEGLARVFYLAT 117

Query: 61  PPSLFASICENLSKAGLVTPTSRVVLEKPLGRDLESARNINAQVGRYFQESQIFRIDHYL 120
           PPSLFASICENLSK GLVTP SRVVLEKPLGRDL SAR+INAQVGRYFQESQIFRIDHYL
Sbjct: 118 PPSLFASICENLSKGGLVTPASRVVLEKPLGRDLASARDINAQVGRYFQESQIFRIDHYL 177

Query: 121 GKEAVQNLLALRFGNVLFEPLWRREWISDVQITIAEELGVGGRFDYYDTSGALRDMLQNH 180
           GKEAVQNLLALRFGNVLFEPLWRREWISDVQITIAEELGVGGRFDYYDTSGALRDMLQNH
Sbjct: 178 GKEAVQNLLALRFGNVLFEPLWRREWISDVQITIAEELGVGGRFDYYDTSGALRDMLQNH 237

Query: 181 LLQLLCIVAMEPPVSNSADAVRDEKLKVLRSLKRFTPTTLAMNVVRGQYRAGHVDGVAVP 240
           LLQLLCIVAMEPPVSNSADAVRDEKLKVLRSLKRFTPTTLAMNVVRGQYRAGHV+GVAVP
Sbjct: 238 LLQLLCIVAMEPPVSNSADAVRDEKLKVLRSLKRFTPTTLAMNVVRGQYRAGHVNGVAVP 297

Query: 241 GYRKEADANPDSRTETYVAVKAEIDTWRWAGVPFYLRTGKRMADSLAEIVVRFKSVPHAI 300
           GYRKEADANPDSRTETYVAVKAEIDTWRWAGVPFYLRTGKRMADSLAEIVVRFKSVPH+I
Sbjct: 298 GYRKEADANPDSRTETYVAVKAEIDTWRWAGVPFYLRTGKRMADSLAEIVVRFKSVPHSI 357

Query: 301 FAHQNDTPNCLVIRLQPDEGLHMNLMAKQPGDGMRLRPVELELDFREKFKTPRMDAYERL 360
           FAHQNDTPNCLVIRLQPDEGLHMNLMAKQPGDGMRLRPVELELDFREKFKTPRMDAYERL
Sbjct: 358 FAHQNDTPNCLVIRLQPDEGLHMNLMAKQPGDGMRLRPVELELDFREKFKTPRMDAYERL 417

Query: 361 LLDVLRGHLTLFMRSDELEAAWEWVEPILTYWDQQEADPVPYNAGTWGPAAASALIGRDG 420
           LLDVLRGHLTLFMRSDELEAAWEWVEPIL +WDQQEADPVPYNAGTWGPAAASALIGRDG
Sbjct: 418 LLDVLRGHLTLFMRSDELEAAWEWVEPILNHWDQQEADPVPYNAGTWGPAAASALIGRDG 477

Query: 421 LQWREEALPEV 431
           LQWREEALPEV
Sbjct: 478 LQWREEALPEV 488


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,413,868
Number of extensions: 59471
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)