BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0115.p (492 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 347 1e-96 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 345 3e-96 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 328 4e-91 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 323 1e-89 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 310 2e-85 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 347 bits (890), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 200/481 (41%), Positives = 287/481 (59%), Gaps = 13/481 (2%) Query: 5 LLEAHGVSKSFHEVVALADGRLQLKRGSVHALCGGNGAGKSTFLAIIMGLLRRDGGEIRL 64 +L G+ K F VVAL D ++ G V AL G NGAGKST + I+ G+ + D G I L Sbjct: 35 VLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHL 94 Query: 65 KGQPVDFHSPAEALQHHIAIITQELSPIPGMSVAENLYLGREPRVAGLC-----VNTRAM 119 G+ V F S +A++ I + QE +SVAEN+++GR+P LC ++ R M Sbjct: 95 GGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQP----LCGTPRRIDWRRM 150 Query: 120 ERQAQALLDRLQFQVDARARMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETE 179 E +A+AL RL+ + RAR++DLS+AQ VEIA+A S V+IMDEPT+A+ E Sbjct: 151 EDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIG 210 Query: 180 VLFRAIRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRFVETGLIGDIDRASLVKAIV 239 L+R I + GT +I++SH+ EI+ +AD YTV RDGRF+ +G + DI LV +V Sbjct: 211 ELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMV 270 Query: 240 GRTL-QVQERRRRQGGE---AILSTEALGRQGEFDQVSLQVHAGEVVGIYGLMGSGRSEY 295 GR + QV R + +L + L EFD VS V GE++G YGL+G+GRSE Sbjct: 271 GREVGQVFSRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAGRSEV 330 Query: 296 LNCIYGLTRPDQGAVTLRQRPLPAGRPAASIAAGLSLVTEDRKDSGLVLCASIQDNIVLA 355 ++ ++GL+ QGAV + R + PA +IA GL+ V EDR+ G +L I NI L Sbjct: 331 MHALFGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQNITLP 390 Query: 356 AYRRMSRLPLIRRSRVDTLVRQMIQRLQIKVSSPHLPVSSMSGGNQQKVVLARCLSTQPR 415 + R R + R++ ++L++K S H V+ +SGGNQQKVVLA+ L+TQPR Sbjct: 391 VLPGIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAKWLATQPR 450 Query: 416 CLLCDEPTRGIDEGAKREVYQLIDRFVQDGGAALVVSSEAQEILDLCDRIAIFKRGRVVE 475 L+ DEPT+GID G+K V++ I V G A ++VSSE E++ + DRI + +GRV + Sbjct: 451 VLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVMHQGRVQQ 510 Query: 476 V 476 V Sbjct: 511 V 511 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 345 bits (886), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 197/493 (39%), Positives = 288/493 (58%), Gaps = 5/493 (1%) Query: 5 LLEAHGVSKSFHEVVALADGRLQLKRGSVHALCGGNGAGKSTFLAIIMGLLRRDGGEIRL 64 LL+ G+ KSF +AL+D L ++ G +HAL G NGAGKST + ++ G+ D GEI L Sbjct: 6 LLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILL 65 Query: 65 KGQPVDFHSPAEALQHHIAIITQELSPIPGMSVAENLYLGREPRVAGLCVNTRAMERQAQ 124 G+PV P + I +I QEL+ P +SVA N+++G E R ++ AM + Sbjct: 66 DGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMRSRTD 125 Query: 125 ALLDRLQFQVDARARMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFRA 184 A+L +L A LS+A+ Q VEIA+A H ++IMDEPT+A+ E+ETE LF Sbjct: 126 AVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNV 185 Query: 185 IRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRFVETGLIGDIDRASLVKAIVGRTLQ 244 +R + +G IIY+SHR++E++ +AD TV RDG FV + +ID +V+ +VGR+L Sbjct: 186 VRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMVGRSLS 245 Query: 245 --VQERRRRQGGEAILSTEALGRQ---GEFDQVSLQVHAGEVVGIYGLMGSGRSEYLNCI 299 Q +R A L T R G+ S V AGEV+G GL+G+GR+E + Sbjct: 246 EFYQHQRIAPADAAQLPTVMQVRALAGGKIRPASFDVRAGEVLGFAGLVGAGRTELARLL 305 Query: 300 YGLTRPDQGAVTLRQRPLPAGRPAASIAAGLSLVTEDRKDSGLVLCASIQDNIVLAAYRR 359 +G G + L RP+ +P A++ AG++ V EDRK GL L ++ N + R Sbjct: 306 FGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANATMNVASR 365 Query: 360 MSRLPLIRRSRVDTLVRQMIQRLQIKVSSPHLPVSSMSGGNQQKVVLARCLSTQPRCLLC 419 +RL L+R + + R IQRL +KV+ P PV +SGGNQQKV+LAR L P+ L+ Sbjct: 366 HTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWLEIAPKVLIL 425 Query: 420 DEPTRGIDEGAKREVYQLIDRFVQDGGAALVVSSEAQEILDLCDRIAIFKRGRVVEVVDA 479 DEPTRG+D AK E+YQL+ R G A +V+SSE E++ +CDR+ + + G + + Sbjct: 426 DEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMITGELAG 485 Query: 480 HATTQEELLHLAS 492 A TQE ++ LA+ Sbjct: 486 AAITQENIMRLAT 498 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 328 bits (842), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 182/486 (37%), Positives = 285/486 (58%), Gaps = 3/486 (0%) Query: 10 GVSKSFHEVVALADGRLQLKRGSVHALCGGNGAGKSTFLAIIMGLLRRDGGEIRLKGQPV 69 V K F V+AL + + +L G VHAL G NGAGKST + I+ G+ +RD G+I L G+PV Sbjct: 27 NVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPV 86 Query: 70 DFHSPAEALQHHIAIITQELSPIPGMSVAENLYLGREPRVA-GLCVNTRAMERQAQALLD 128 + P +A I II QEL+ + +S A+N+++GREPR A GL ++ + RQA A+ Sbjct: 87 EITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFA 146 Query: 129 RLQFQVDARARMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFRAIRSV 188 R++ +D + +L++A+ Q+VEIAKA S D V+IMDEPT+A+ E LFR IR + Sbjct: 147 RMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDL 206 Query: 189 AAQGTGIIYVSHRLSEIFQIADSYTVFRDGRFVETGLIGDIDRASLVKAIVGRTLQVQER 248 AQG GI+Y+SH++ E+ QIAD +V RDG+++ T + + +++ +VGR L ++R Sbjct: 207 QAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRALDGEQR 266 Query: 249 --RRRQGGEAILSTEALGRQGEFDQVSLQVHAGEVVGIYGLMGSGRSEYLNCIYGLTRPD 306 + +L L R VS + GE++G GLMG+GR+E I+G + Sbjct: 267 IPPDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLE 326 Query: 307 QGAVTLRQRPLPAGRPAASIAAGLSLVTEDRKDSGLVLCASIQDNIVLAAYRRMSRLPLI 366 G + + PA ++A G+ ++EDRK GL + +Q NI L++ R +R+ + Sbjct: 327 AGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSMGRFTRVGFM 386 Query: 367 RRSRVDTLVRQMIQRLQIKVSSPHLPVSSMSGGNQQKVVLARCLSTQPRCLLCDEPTRGI 426 + + + +++L IK S +SGGNQQK+V+A+ L L DEPTRGI Sbjct: 387 DQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGI 446 Query: 427 DEGAKREVYQLIDRFVQDGGAALVVSSEAQEILDLCDRIAIFKRGRVVEVVDAHATTQEE 486 D GAK E+Y+L+D + G A +++SSE E+L + R+ + GR+ + TQE+ Sbjct: 447 DVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELARADATQEK 506 Query: 487 LLHLAS 492 ++ LA+ Sbjct: 507 IMQLAT 512 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 323 bits (829), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 188/499 (37%), Positives = 288/499 (57%), Gaps = 8/499 (1%) Query: 1 MAELLLEAHGVSKSFHEVVALADGRLQLKRGSVHALCGGNGAGKSTFLAIIMGLLRRDGG 60 M +L+ G+ K+F V L L+++ G VHAL G NGAGKST + I+ G++R D G Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAG 60 Query: 61 EIRLKGQPVDFHSPAEALQHHIAIITQELSPIPGMSVAENLYLGREPRVAGLCVNTRAME 120 EIR+ GQP F S A+ + ++ QE S IP + +N++L RE R + AM Sbjct: 61 EIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMR 120 Query: 121 RQAQALLDRLQFQVDARARMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEV 180 R+AQ ++ +L + + LS+AQ Q VEIAKA + D ++++DEPT+ + E E Sbjct: 121 RRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEH 180 Query: 181 LFRAIRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRFVETGLIGDIDRASLVKAIVG 240 LF +RS+ AQG II++SH L EIF+I D TV RDG +V T ++D+A LV+ +VG Sbjct: 181 LFAVMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVG 240 Query: 241 RTLQ--VQERRRRQG---GEAILSTEALGRQGEFDQVSLQVHAGEVVGIYGLMGSGRSEY 295 R ++ + + G GE +L AL + + Q+ GE++G GL+GSGR+E Sbjct: 241 RRIENCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVSQFQLRRGEILGFAGLVGSGRTET 300 Query: 296 LNCIYGLTRPDQGAVTLRQRPLPAGRPAASIAAGLSLVTEDRKDSGLVLCASIQDNIVLA 355 + + G +++ PL PA ++ AG+ L+ E RK+ GL+ SI N+ L Sbjct: 301 VLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFSILHNVSLN 360 Query: 356 AY--RRMSRLPLIRRSRVDTLVRQMIQRLQIKVSSPHLPVSSMSGGNQQKVVLARCLSTQ 413 Y R+ L L RR R +QR+++K + V ++SGGNQQKVV+AR ++ Sbjct: 361 NYGKYRLGGLFLDRR-REQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQKVVIARWINHA 419 Query: 414 PRCLLCDEPTRGIDEGAKREVYQLIDRFVQDGGAALVVSSEAQEILDLCDRIAIFKRGRV 473 + L+ DEPTRGID GAK E+YQL+ F G + L++SSE E++ + DR+ +F+ G + Sbjct: 420 MKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGI 479 Query: 474 VEVVDAHATTQEELLHLAS 492 V ++ A EE++ A+ Sbjct: 480 VATLEGEAVNAEEIMTHAT 498 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 310 bits (794), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 182/485 (37%), Positives = 275/485 (56%), Gaps = 12/485 (2%) Query: 1 MAELLLEAHGVSKSFHEVVALADGRLQLKRGSVHALCGGNGAGKSTFLAIIMGLLRRDG- 59 M+E LLE G+ KSF V AL ++++ G LCG NGAGKST + I+ G+ Sbjct: 1 MSEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW 60 Query: 60 -GEIRLKGQPVDFHSPAEALQHHIAIITQELSPIPGMSVAENLYLGREPRVAGLCVNTRA 118 GEI G+P+ HS + I II QEL +P +SVAEN+++G E + G +N A Sbjct: 61 EGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPA 120 Query: 119 MERQAQALLDRLQF-QVDARARMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKE 177 M R+A+ L+ L ++ + QLVEIAKA + D ++I+DEP+S++ E Sbjct: 121 MYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASE 180 Query: 178 TEVLFRAIRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRFVETGLIGDIDRASLVKA 237 VL + I+ + A+G +Y+SH+L E+ ++ D+ +V RDG+ + T + ++D ++ Sbjct: 181 IGVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQ 240 Query: 238 IVGRTLQVQERRRRQG-GEAILSTEALG-------RQGEFDQVSLQVHAGEVVGIYGLMG 289 +VGR + R GE +L + R+ D VS V GE++GI GL+G Sbjct: 241 MVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLVG 300 Query: 290 SGRSEYLNCIYGLTRPD-QGAVTLRQRPLPAGRPAASIAAGLSLVTEDRKDSGLVLCASI 348 +GR+E ++ I+G R +G V L +P P SI GL +V EDRK G+V + Sbjct: 301 AGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHGIVPDLDV 360 Query: 349 QDNIVLAAYRRMSRLPLIRRSRVDTLVRQMIQRLQIKVSSPHLPVSSMSGGNQQKVVLAR 408 NI L R SR I S ++ I R+++K ++P LP++S+SGGNQQK VLA+ Sbjct: 361 GQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKAVLAK 420 Query: 409 CLSTQPRCLLCDEPTRGIDEGAKREVYQLIDRFVQDGGAALVVSSEAQEILDLCDRIAIF 468 L QP+ L+ DEPTRG+D GAK E+Y+LI + G A ++VSSE E+L + DR+ + Sbjct: 421 MLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLVI 480 Query: 469 KRGRV 473 GR+ Sbjct: 481 GEGRL 485 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,441,460 Number of extensions: 60709 Number of successful extensions: 817 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 558 Number of HSP's successfully gapped: 214 Length of query: 492 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 403 Effective length of database: 1,198,455 Effective search space: 482977365 Effective search space used: 482977365 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)