BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0108.p (510 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 712 0.0 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 235 5e-63 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 186 3e-48 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 183 2e-47 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 180 2e-46 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/509 (75%), Positives = 434/509 (85%) Query: 2 LTVGQRLFVLILLASMGLVATAIVSLRQIGNVYEAASYAQVNTVPSVTTLDDAQAAFNGM 61 L+VGQRL VLILLA +GLVATA VSLRQI NVY AA+YAQVNTVPSVTTLDDAQAAFN + Sbjct: 9 LSVGQRLSVLILLALLGLVATAAVSLRQIENVYTAANYAQVNTVPSVTTLDDAQAAFNAI 68 Query: 62 RERVYFYLINLDPADRARLVQEMDQLRARMNGHLKTYGDAYISDETDGAMLAEVHARIAG 121 + R+Y YL+N DP DR+RL++EMD RARM HL TY +AYI+DETDGAMLA+ A IA Sbjct: 69 QGRIYQYLVNPDPRDRSRLIKEMDVQRARMQRHLHTYANAYITDETDGAMLADDRAHIAA 128 Query: 122 FEEVRNRLLVESGRSLVHDSHTALGLEFRTAIDSVQASFARHRSYNVALGEASALSAREI 181 FEEV RLL + V DS LEFR AID+VQASFARHRSYNVALG+ASAL+AREI Sbjct: 129 FEEVVRRLLAVAEEDRVEDSLGLSVLEFRAAIDTVQASFARHRSYNVALGDASALTAREI 188 Query: 182 ISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTVMQRLSDGDLLQQIRLK 241 I ALE+VA+VAG VLL L+ AGWLLTRTLL QMGGEPG+VVTVMQRLSDGDL+Q I LK Sbjct: 189 IGQALETVALVAGGVLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLK 248 Query: 242 PGCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATEQASGVAQT 301 PGC DSMMHAI+KM+ RL +VV EVRGNA+G+ +A EVSATAQ L+ A+TEQA+GV QT Sbjct: 249 PGCRDSMMHAIQKMMTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQT 308 Query: 302 STALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQVIAGKIAIIDDIA 361 S AL+QIHA + +TA NARLTDQIA+AAA+EA QCA+TV +MVAAIQ IAGKIA+IDDIA Sbjct: 309 SEALAQIHALLQSTAQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIA 368 Query: 362 YQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVARDHTVLASRVE 421 YQTNLLALNATIEAAHAG+HG+GFAVVA EVRRLAERSQ+AA+EID+VAR + LA E Sbjct: 369 YQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARANVTLACAAE 428 Query: 422 RQLGDMVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLAQIVQQNSISSEELAVTSE 481 RQL DMVPTI RTS LVQ+IVQSSEQQS AVSQIS AASQLAQ++QQNS+SSEELAVTSE Sbjct: 429 RQLSDMVPTITRTSVLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSSEELAVTSE 488 Query: 482 ELNRRATTLRSSVGFFQCQLARGMQASLA 510 ELNRRA L+++VGFFQCQLARGMQA LA Sbjct: 489 ELNRRALLLQTAVGFFQCQLARGMQARLA 517 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 235 bits (600), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 140/309 (45%), Positives = 204/309 (66%) Query: 195 AVLLTLIAAGWLLTRTLLHQMGGEPGEVVTVMQRLSDGDLLQQIRLKPGCADSMMHAIRK 254 A ++ L A WL R + Q+GGEP + ++V++R+++GDL + L G S++++ ++ Sbjct: 242 ASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQ 301 Query: 255 MVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATEQASGVAQTSTALSQIHAAILT 314 M+ + V+ +V G A +A ++ ++S+++Q L+ A +QA+ V +TS ++ +I A I Sbjct: 302 MINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQ 361 Query: 315 TADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQVIAGKIAIIDDIAYQTNLLALNATIE 374 ADNAR TD IAS +A A + + V E VAA++ IA KI IIDDIAYQTNLLALNA IE Sbjct: 362 NADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIE 421 Query: 375 AAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVARDHTVLASRVERQLGDMVPTIART 434 AA AG+HG GFAVVA EVR+LAERSQ+AA+EI VA LA + L MVP+I +T Sbjct: 422 AARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKT 481 Query: 435 SALVQEIVQSSEQQSAAVSQISAAASQLAQIVQQNSISSEELAVTSEELNRRATTLRSSV 494 + LVQEI +S +QS + QI+ A Q+AQ Q + +SEEL+ TSEE++ +A L+ + Sbjct: 482 ADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLM 541 Query: 495 GFFQCQLAR 503 FFQ R Sbjct: 542 RFFQVGEPR 550 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 186 bits (473), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 156/520 (30%), Positives = 265/520 (50%), Gaps = 32/520 (6%) Query: 2 LTVGQRLFVLILLASMGLVATAIVSLRQIGNVYEAASYAQVNTVPSVTTLDDAQAAFNGM 61 L++ RL++LI +G V A ++ ++ Y AS+A N VPS+ +L NGM Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 62 RERVYFYLINLDPADRARLVQEMDQLRARMNGHLKTYGDAYISDETDGAMLAEVHARIAG 121 R + YL + DR + + + R+ L+ Y ++D TD +L V Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 122 FEEVRNRLLVESGRSLVHDSHTALGLEFRTAIDSVQASFARHRSYNVALGEASALSAREI 181 F++ L + +++ AL + ID + + R+YN + +A A A+E Sbjct: 123 FDKSLAEALKLANAGQWNEAR-ALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQET 181 Query: 182 ISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTVMQRLSDGDLLQQIRLK 241 ++ A +++ AV+ + G L+ R + + E V + + +++GDL ++I Sbjct: 182 MAAARLHAILISAAVIAVVTLMGLLIARKIARSLA----EAVELAETIAEGDLTREI--D 235 Query: 242 PGCADSMMH---AIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATEQ-ASG 297 D + H A+ KM L +VA VR +A +++++ AT + +A TEQ AS Sbjct: 236 TSSTDEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQI-ATGNMDLSARTEQQASS 294 Query: 298 VAQTSTALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQ-------VI 350 + QT+ A ++ + + A+NA DQ+ASAA+ A + + V ++V ++ I Sbjct: 295 LEQTAAATEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNI 354 Query: 351 AGKIAIIDDIAYQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVA 410 A I++ID IA+QTN+LALNA +EAA AG+ G GFAVVA EVR LA+RS +AA+EI Q+ Sbjct: 355 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLI 414 Query: 411 RDHTVLASRVE----------RQLGDMVPTIARTSALVQEIVQSSEQQSAAVSQISAAAS 460 D S+VE + +V ++ R + +V EI +S +QS + Q++ A S Sbjct: 415 DDSV---SKVENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAIS 471 Query: 461 QLAQIVQQNSISSEELAVTSEELNRRATTLRSSVGFFQCQ 500 + Q Q+N+ EE ++ L +A L +V F+ + Sbjct: 472 HMDQSTQENAALVEEATAAAQSLQEQARQLERAVNVFKLR 511 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 183 bits (465), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 154/515 (29%), Positives = 265/515 (51%), Gaps = 23/515 (4%) Query: 2 LTVGQRLFVLILLASMGLVATAIVSLRQIGNVYEAASYAQVNTVPSVTTLDDAQAAFNGM 61 +T+ ++L++LI+ +G++ A+V L Q + +A Y+ +T+PSV L+ A A G+ Sbjct: 31 MTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDAIYGI 90 Query: 62 RERVYFYLINLDPADRARLVQEMDQLRARMNGHLKTYGDAYISDETDGAMLAEVHARIAG 121 R + Y+I +P R + V M L + + ISD+TD ML A Sbjct: 91 RLNIARYVI--EPTAREKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRRFFAE 148 Query: 122 FEEVRNRLLVESGRSLVHDS-HTALGLEFRTAIDSVQASFARHRSYNVALGEASALSARE 180 +E+ R +V+ G + D+ A+ + + A H++YN LG A +A E Sbjct: 149 YEKHR-MAMVDLGSAGKEDALRVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQGAEAADE 207 Query: 181 IISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTVMQRLSDGDLLQQIRL 240 + ++ A V++ + A LL R + H + E+ + R GDL QI L Sbjct: 208 HLQLSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAAT-ELADTIGR---GDLSSQIVL 263 Query: 241 KP-GCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATEQASGVA 299 + +M ++++M L +++ +V +A + + E+++ L++ QA + Sbjct: 264 RGRDEVTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLDLSSRTEAQAGSLE 323 Query: 300 QTSTALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQVIAGK------ 353 +T +A+ Q+ + ADNAR D++A +A+ A Q + V E++ ++ I Sbjct: 324 ETVSAMGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVD 383 Query: 354 -IAIIDDIAYQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVARD 412 I++ID IA+QTN+LALNA +EAA AG+ G GFAVVA EVR LA+RS +AA EI ++ D Sbjct: 384 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDD 443 Query: 413 ---HTVLASRVERQLG----DMVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLAQI 465 SR+ Q G ++V ++ R S +V++I +S +QS ++Q++ A + Q Sbjct: 444 SVNKVQSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQT 503 Query: 466 VQQNSISSEELAVTSEELNRRATTLRSSVGFFQCQ 500 QQN+ EE A S+ L +A L +V F+ + Sbjct: 504 TQQNAALVEEAAAASQSLREQAKGLAQAVSVFRLE 538 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 163/517 (31%), Positives = 267/517 (51%), Gaps = 25/517 (4%) Query: 2 LTVGQRLFVLILLASMGLVATAIVSLRQIGNVYEAASYAQVNTVPSVTTLDDAQAAFNGM 61 +T+ ++L +L L +GL + +++ + Q V +AASY+ VNTVPS+ L DA A G+ Sbjct: 1 MTIAKKLHLLTLAVILGLASLSLLGIYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGI 60 Query: 62 RERVYFYLINLDPADRARLVQEMDQLRARMNGHLKTYGDAYISDETDGAMLAEVHARIAG 121 R ++ Y DP R RL + M + R+ Y ISD+TD +L A Sbjct: 61 RVGIWKYAAATDPVSRTRLEKAMAEQHDRVLAAFDRYAREDISDDTDRKLLEADRQAFAD 120 Query: 122 FEEVRNRLLVESGRSLVHDSHTALGLEFRTAIDSVQASFARHRSYNVALGEASALSAREI 181 +E+ R +L S ++ A+ D + A+ A HR Y LG +A I Sbjct: 121 YEKQRAVVLRIGAESRNEEALRAIEQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGI 180 Query: 182 ISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPG--EVVTVMQRLSDGDLLQQIR 239 + + A+L++L+ A + +LL G + + V ++ GDL +++ Sbjct: 181 LQSSTYQ------AILVSLLVAAIVGATSLLISRGISVSLDDAIRVANAIAHGDLSSKVK 234 Query: 240 LK-PGCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATE-QASG 297 + ++HAI +M L +V VR + + +++E+ A+ L +A TE QA Sbjct: 235 MTGKDEVGQLLHAIGEMTASLVNIVGNVRQSVAAIESASSEI-ASGNLDLSARTEAQAGS 293 Query: 298 VAQTSTALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQVIAGK---- 353 + +T++A+ Q+ A + ADNA D +AS+A+ A + + V E+V + I Sbjct: 294 IEETASAMEQLTATVKQNADNAHQADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKI 353 Query: 354 ---IAIIDDIAYQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVA 410 I++ID IA+QTN+LALNA +EAA AG+ G GFAVVA EVR LA+RS +AA EI ++ Sbjct: 354 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELI 413 Query: 411 RD---HTVLASRVERQLGD----MVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLA 463 D SR+ Q G+ +V ++ R S +V++I +S +QS ++Q++ A + Sbjct: 414 DDSVEKVQSGSRLVMQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMD 473 Query: 464 QIVQQNSISSEELAVTSEELNRRATTLRSSVGFFQCQ 500 Q QQN+ EE A S+ L +A L +V F+ + Sbjct: 474 QTTQQNAALVEEAAAASQSLREQAKGLAQAVSVFRLE 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.127 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,094,784 Number of extensions: 35865 Number of successful extensions: 402 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 274 Number of HSP's successfully gapped: 69 Length of query: 510 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 421 Effective length of database: 1,198,455 Effective search space: 504549555 Effective search space used: 504549555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)