BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0107.p (168 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 293 3e-81 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 177 5e-46 gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 136 1e-33 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 110 8e-26 gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis tra... 109 1e-25 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 293 bits (751), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 152/168 (90%), Positives = 156/168 (92%) Query: 1 MVDAIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSA 60 MV AIQQIAGKI VIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSA Sbjct: 350 MVAAIQQIAGKIAVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSA 409 Query: 61 AQEIDEVARSNVALACAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQL 120 AQEIDEVAR+NV LACAAERQL+DMVPTI RTS LVQ+IV SSE QS AVSQIS AASQL Sbjct: 410 AQEIDEVARANVTLACAAERQLSDMVPTITRTSVLVQDIVQSSEQQSTAVSQISTAASQL 469 Query: 121 AQVIQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQCQLARGMQPRLA 168 AQVIQQNSLSSEELAVTSEELNRRA+LLQT V FFQCQLARGMQ RLA Sbjct: 470 AQVIQQNSLSSEELAVTSEELNRRALLLQTAVGFFQCQLARGMQARLA 517 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 177 bits (448), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 98/165 (59%), Positives = 119/165 (72%) Query: 2 VDAIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAA 61 V A++QIA KI +IDDIAYQTNLLALNA IEAA AGEHG GFAVVAAEVR+LAERSQSAA Sbjct: 391 VAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQSAA 450 Query: 62 QEIDEVARSNVALACAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLA 121 QEI VA ++V LA A LN MVP+I +T+ LVQEI +S QS + QI+ A Q+A Sbjct: 451 QEIIAVAETSVGLAEKAGGLLNQMVPSIRKTADLVQEIAAASHEQSTGLEQINNAVHQMA 510 Query: 122 QVIQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQCQLARGMQPR 166 Q Q + +SEEL+ TSEE++ +A+ LQ + FFQ R PR Sbjct: 511 QTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGEPRKNAPR 555 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 136 bits (342), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/165 (48%), Positives = 113/165 (68%), Gaps = 1/165 (0%) Query: 2 VDAIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAA 61 VDA++ IA ++ VIDDIAYQTNLLALNA IEAA AGEHG GF+VVAAEVR+LAERSQS+A Sbjct: 371 VDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEVRKLAERSQSSA 430 Query: 62 QEIDEVARSNVALA-CAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQL 120 EI +A+ +V LA ++R + + I + S + +I SS Q V++I A +QL Sbjct: 431 HEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQEEGVAEIGVAVTQL 490 Query: 121 AQVIQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQCQLARGMQP 165 Q+N+ +SEELA+T+E + RA L +++F+ + ++ QP Sbjct: 491 NDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQP 535 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 110 bits (274), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/169 (42%), Positives = 104/169 (61%), Gaps = 7/169 (4%) Query: 3 DAIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQ 62 D+ ++I I VID IA+QTN+LALNA +EAA AGE G GFAVVA+EVR LA+RS +AA+ Sbjct: 355 DSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAK 414 Query: 63 EI-----DEVAR--SNVALACAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQ 115 EI D VA+ S L A + ++V ++ R + ++ EI + E Q + + Q+SQ Sbjct: 415 EIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQ 474 Query: 116 AASQLAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQCQLARGMQ 164 A Q+ QV QQN+ E+ A S+ L +A L VS F+ + + ++ Sbjct: 475 AVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALE 523 >gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 548 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 106/160 (66%), Gaps = 7/160 (4%) Query: 6 QQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEID 65 ++I I VID IA+QTN+LALNA +EAA AGE G GFAVVA+EVR LA+RS +AA+EI Sbjct: 354 RKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 413 Query: 66 EVARSNVALACAAER-------QLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAAS 118 E+ +V+ + + ++D+V ++ R + +V +I ++SE QSA +SQ++QA + Sbjct: 414 ELIDDSVSKVGSGSKLVEQAGTTMSDIVDSVQRVTVIVGDIANASEEQSAGISQVNQAIA 473 Query: 119 QLAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQCQ 158 Q+ Q QQN+ EE A + L ++A L++ V+ F+ + Sbjct: 474 QMDQGTQQNAALVEEAAAAAHALQQQAETLESVVAVFKLE 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.122 0.309 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 310,258 Number of extensions: 7208 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 69 Length of query: 168 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 89 Effective length of database: 1,245,805 Effective search space: 110876645 Effective search space used: 110876645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)