BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0106.p (501 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 805 0.0 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 260 2e-70 gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 197 1e-51 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 196 4e-51 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 191 8e-50 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/486 (83%), Positives = 443/486 (91%) Query: 16 VSLRQIENVYHAANYATVNTVPSVTTLDDAQAAFNAIQGRIYQYLVNPDPLDRARLLKEI 75 VSLRQIENVY AANYA VNTVPSVTTLDDAQAAFNAIQGRIYQYLVNPDP DR+RL+KE+ Sbjct: 32 VSLRQIENVYTAANYAQVNTVPSVTTLDDAQAAFNAIQGRIYQYLVNPDPRDRSRLIKEM 91 Query: 76 ETQRARLNQHLKTYAEAYITDETDGLMLADDQARIVAFDEVVRRLLKVSDEDRIEDSLPQ 135 + QRAR+ +HL TYA AYITDETDG MLADD+A I AF+EVVRRLL V++EDR+EDSL Sbjct: 92 DVQRARMQRHLHTYANAYITDETDGAMLADDRAHIAAFEEVVRRLLAVAEEDRVEDSLGL 151 Query: 136 AILEFRASIDAVQVTFGRHRSYNIALGDASALSAREMISDALQTVSLLAGGIMLVLLGSG 195 ++LEFRA+ID VQ +F RHRSYN+ALGDASAL+ARE+I AL+TV+L+AGG++L+LLG+G Sbjct: 152 SVLEFRAAIDTVQASFARHRSYNVALGDASALTAREIIGQALETVALVAGGVLLILLGAG 211 Query: 196 WLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQQISVKARYRDSMMHAIQKMMERLCLVVS 255 WLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQ I++K RDSMMHAIQKMM RL VV Sbjct: 212 WLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPGCRDSMMHAIQKMMTRLAQVVG 271 Query: 256 EVRGNAEGLVSTAEEVSATAQSLSRASTEQASGVEQTSAALEQIHASILSTSQNARLTDQ 315 EVRGNA+GLVSTAEEVSATAQSLSRASTEQA+GVEQTS AL QIHA + ST+QNARLTDQ Sbjct: 272 EVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQTSEALAQIHALLQSTAQNARLTDQ 331 Query: 316 IAAAAAVEARACADTVKQMVDAIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSG 375 IAAAAA+EAR CA+TVKQMV AIQQIAGKI VIDDIAYQTNLLALNATIEAAHAGEHGSG Sbjct: 332 IAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQTNLLALNATIEAAHAGEHGSG 391 Query: 376 FAVVAAEVRRLAERSQSAAQEIDEVARSNVALACAAERQLNDMVPTIARTSALVQEIVHS 435 FAVVAAEVRRLAERSQSAAQEIDEVAR+NV LACAAERQL+DMVPTI RTS LVQ+IV S Sbjct: 392 FAVVAAEVRRLAERSQSAAQEIDEVARANVTLACAAERQLSDMVPTITRTSVLVQDIVQS 451 Query: 436 SESQSAAVSQISQAASQLAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQCQLARG 495 SE QS AVSQIS AASQLAQVIQQNSLSSEELAVTSEELNRRA+LLQT V FFQCQLARG Sbjct: 452 SEQQSTAVSQISTAASQLAQVIQQNSLSSEELAVTSEELNRRALLLQTAVGFFQCQLARG 511 Query: 496 MQPRLA 501 MQ RLA Sbjct: 512 MQARLA 517 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 260 bits (665), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 151/322 (46%), Positives = 217/322 (67%) Query: 178 QTVSLLAGGIMLVLLGSGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQQISVKARYRD 237 Q + L ++VL WL R + Q+GGEP D ++V++R+++GDL + + + Sbjct: 234 QKIFWLLAASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKL 293 Query: 238 SMMHAIQKMMERLCLVVSEVRGNAEGLVSTAEEVSATAQSLSRASTEQASGVEQTSAALE 297 S++++ Q+M+ + V+ +V G A L S +E++S+++Q+LS + +QA+ VE+TSA++E Sbjct: 294 SVLYSTQQMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVE 353 Query: 298 QIHASILSTSQNARLTDQIAAAAAVEARACADTVKQMVDAIQQIAGKIVVIDDIAYQTNL 357 +I A+I + NAR TD IA+ +A A + V++ V A++QIA KI +IDDIAYQTNL Sbjct: 354 EITATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNL 413 Query: 358 LALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARSNVALACAAERQLND 417 LALNA IEAA AGEHG GFAVVAAEVR+LAERSQSAAQEI VA ++V LA A LN Sbjct: 414 LALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQ 473 Query: 418 MVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQVIQQNSLSSEELAVTSEELNRR 477 MVP+I +T+ LVQEI +S QS + QI+ A Q+AQ Q + +SEEL+ TSEE++ + Sbjct: 474 MVPSIRKTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQ 533 Query: 478 AVLLQTTVSFFQCQLARGMQPR 499 A+ LQ + FFQ R PR Sbjct: 534 AIHLQDLMRFFQVGEPRKNAPR 555 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 197 bits (502), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/304 (40%), Positives = 201/304 (66%), Gaps = 2/304 (0%) Query: 196 WLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQQISVKARYRDSMMHAIQKMMERLCLVVS 255 W++ + R++GGEP ++++++DG+L ++++++ R S+++A+ M RL ++ Sbjct: 233 WIIA-GVRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMR 291 Query: 256 EVRGNAEGLVSTAEEVSATAQSLSRASTEQASGVEQTSAALEQIHASILSTSQNARLTDQ 315 V + + L ++ +++ATA +L++AS+EQA+ VE+ A+ ++ +I T ++AR T+Q Sbjct: 292 NVTLSTQALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQ 351 Query: 316 IAAAAAVEARACADTVKQMVDAIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSG 375 IA AAA +A V+ VDA++ IA ++ VIDDIAYQTNLLALNA IEAA AGEHG G Sbjct: 352 IAVAAASDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRG 411 Query: 376 FAVVAAEVRRLAERSQSAAQEIDEVARSNVALA-CAAERQLNDMVPTIARTSALVQEIVH 434 F+VVAAEVR+LAERSQS+A EI +A+ +V LA ++R + + I + S + +I Sbjct: 412 FSVVAAEVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITL 471 Query: 435 SSESQSAAVSQISQAASQLAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQCQLAR 494 SS Q V++I A +QL Q+N+ +SEELA+T+E + RA L +++F+ + ++ Sbjct: 472 SSRMQEEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQ 531 Query: 495 GMQP 498 QP Sbjct: 532 QGQP 535 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 149/507 (29%), Positives = 269/507 (53%), Gaps = 22/507 (4%) Query: 1 VLILLALLGLVATAAVSLRQIENVYHAANYATVNTVPSVTTLDDAQAAFNAIQGRIYQYL 60 +LI ++G V A ++ ++ Y A++A+ N VPS+ +L N ++ ++YL Sbjct: 11 ILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGMRIATWRYL 70 Query: 61 VNPDPLDRARLLKEIETQRARLNQHLKTYAEAYITDETDGLMLADDQARIVAFDEVVRRL 120 + +DR + + + R+ L+ Y + + D TD +L + FD+ + Sbjct: 71 ALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQEFDKSLAEA 130 Query: 121 LKVSDEDRIEDSLPQAIL-EFRASIDAVQVTFGRHRSYNIALGDASALSAREMISDALQT 179 LK+++ + ++ +A+L + ID + R+YN + A A A+E ++ A Sbjct: 131 LKLANAGQWNEA--RALLANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQETMAAARLH 188 Query: 180 VSLLAGGIMLVLLGSGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQQISVKARYR-DS 238 L++ ++ V+ G L+ R + R + + V + + +++GDL ++I + Sbjct: 189 AILISAAVIAVVTLMGLLIARKIARSLA----EAVELAETIAEGDLTREIDTSSTDEIGH 244 Query: 239 MMHAIQKMMERLCLVVSEVRGNAEGLVSTAEEVSATAQSLSRASTEQASGVEQTSAALEQ 298 +M A+ KM L +V+ VR + + + +++ LS + +QAS +EQT+AA E+ Sbjct: 245 LMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEE 304 Query: 299 IHASILSTSQNARLTDQIAAAAAVEARACADTVKQMVDAIQQI-------AGKIVVIDDI 351 + +++ ++NA DQ+A+AA+ A + VKQ+V +++I A I VID I Sbjct: 305 LTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGI 364 Query: 352 AYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARSNVA----- 406 A+QTN+LALNA +EAA AGE G GFAVVA EVR LA+RS SAA+EI ++ +V+ Sbjct: 365 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENG 424 Query: 407 --LACAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQVIQQNSLSS 464 L +A + +V ++ R + +V EI +S QS + Q++QA S + Q Q+N+ Sbjct: 425 SQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALV 484 Query: 465 EELAVTSEELNRRAVLLQTTVSFFQCQ 491 EE ++ L +A L+ V+ F+ + Sbjct: 485 EEATAAAQSLQEQARQLERAVNVFKLR 511 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 191 bits (486), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 165/493 (33%), Positives = 259/493 (52%), Gaps = 27/493 (5%) Query: 18 LRQIENVYHAANYATVNTVPSVTTLDDAQAAFNAIQGRIYQYLVNPDPLDRARLLKEIET 77 + Q V AA+Y++VNTVPS+ L DA A I+ I++Y DP+ R RL K + Sbjct: 26 IYQSREVAKAASYSSVNTVPSLLALGDAGEAAFGIRVGIWKYAAATDPVSRTRLEKAMAE 85 Query: 78 QRARLNQHLKTYAEAYITDETDGLMLADDQARIVAFDEVVRRLLKVSDEDRIEDSLPQAI 137 Q R+ YA I+D+TD +L D+ +++ +L++ E R E++L +AI Sbjct: 86 QHDRVLAAFDRYAREDISDDTDRKLLEADRQAFADYEKQRAVVLRIGAESRNEEAL-RAI 144 Query: 138 LEFRASI-DAVQVTFGRHRSYNIALGDASALSAREMI-SDALQT--VSLLAGGIMLVLLG 193 + D + HR Y LG +A ++ S Q VSLL I +G Sbjct: 145 EQLVVPPGDKLIAALAEHRKYKEQLGRQGVETAEGILQSSTYQAILVSLLVAAI----VG 200 Query: 194 SGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQQISVKARYR-DSMMHAIQKMMERLCL 252 + LL + R + D + V ++ GDL ++ + + ++HAI +M L Sbjct: 201 ATSLL---ISRGISVSLDDAIRVANAIAHGDLSSKVKMTGKDEVGQLLHAIGEMTASLVN 257 Query: 253 VVSEVRGNAEGLVSTAEEVSATAQSLSRASTEQASGVEQTSAALEQIHASILSTSQNARL 312 +V VR + + S + E+++ LS + QA +E+T++A+EQ+ A++ + NA Sbjct: 258 IVGNVRQSVAAIESASSEIASGNLDLSARTEAQAGSIEETASAMEQLTATVKQNADNAHQ 317 Query: 313 TDQIAAAAAVEARACADTVKQMV---DAIQQIAGKIV----VIDDIAYQTNLLALNATIE 365 D +A++A+ A V+++V DAI + KIV VID IA+QTN+LALNA +E Sbjct: 318 ADTLASSASSVASEGGKVVQEVVHTMDAINSSSLKIVDIISVIDGIAFQTNILALNAAVE 377 Query: 366 AAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEV-------ARSNVALACAAERQLNDM 418 AA AGE G GFAVVA+EVR LA+RS SAA+EI E+ +S L A + + Sbjct: 378 AARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVEKVQSGSRLVMQAGNTMEQV 437 Query: 419 VPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQVIQQNSLSSEELAVTSEELNRRA 478 V ++ R S +V++I +S QS ++Q++QA + Q QQN+ EE A S+ L +A Sbjct: 438 VTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAAASQSLREQA 497 Query: 479 VLLQTTVSFFQCQ 491 L VS F+ + Sbjct: 498 KGLAQAVSVFRLE 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.127 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,126,079 Number of extensions: 39004 Number of successful extensions: 512 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 70 Length of query: 501 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 412 Effective length of database: 1,198,455 Effective search space: 493763460 Effective search space used: 493763460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)