BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0105.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310427|ref|YP_003774519.1| L-idonate 5-dehydrogenase [Herb...   332   7e-93
gi|300312693|ref|YP_003776785.1| D-xylulose reductase [Herbaspir...    59   2e-10

>gi|300310427|ref|YP_003774519.1| L-idonate 5-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  332 bits (852), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 165/171 (96%), Positives = 168/171 (98%)

Query: 1   VTGCGPIGALVVVAARRAGALEVVVTDVASMPLQAALQVGADRAINMAETPDALKAYAVD 60
           VTGCGPIGALVVVAARRAGALEVVVTDVASMPLQAALQVGAD AINMAETP ALKAYA D
Sbjct: 175 VTGCGPIGALVVVAARRAGALEVVVTDVASMPLQAALQVGADSAINMAETPAALKAYAAD 234

Query: 61  KGTFDVLFEASGNERALVGALEALRPQAVIVQVGLGGDIQFPANLLVGKELDWRGAFRFH 120
           KGTFDVLFEASGNERALVGALEALRPQA+IVQVGLGGDIQFPANLLVGKEL+WRGAFRFH
Sbjct: 235 KGTFDVLFEASGNERALVGALEALRPQAIIVQVGLGGDIQFPANLLVGKELEWRGAFRFH 294

Query: 121 EEFAMAVELMNRKLVDVKPLITATYPIAQAVEAFEIAGDRSKMMKVQISFD 171
           EEFAMAVELMNRKLVDVKPLITATYPIAQAVEAFEIAGDRS+MMKVQISFD
Sbjct: 295 EEFAMAVELMNRKLVDVKPLITATYPIAQAVEAFEIAGDRSRMMKVQISFD 345


>gi|300312693|ref|YP_003776785.1| D-xylulose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 3/174 (1%)

Query: 1   VTGCGPIGALVVVAARRAGALEVVVTDVASMPLQAALQVGADRAINMA-ETPDALKAYAV 59
           V G G IGA+  +AA   GA  V++ DV +  L       A   +++  ET   +   A 
Sbjct: 171 VIGAGTIGAMTALAALAGGAARVILADVVAEKLAHFADNPAVITVDVTRETLTDVVRQAT 230

Query: 60  DKGTFDVLFEASGNERALVGALEALRPQAVIVQVGLG-GDIQFPANLLVGKELDWRGAFR 118
           D    DV+FEASG+       L+ + P    V VG+    +      +  KE+     FR
Sbjct: 231 DGWGADVVFEASGHAGVYQTLLDLVCPGGCAVLVGMPPAPVALDVVAMQTKEVRLESVFR 290

Query: 119 FHEEFAMAVELMNRKLVDVKPLITATYPIAQAVEAF-EIAGDRSKMMKVQISFD 171
           +   F  A+ L++  ++DVKP I+  +P +Q++ AF E A  R + +K+QI  +
Sbjct: 291 YANIFPRALALISSGMIDVKPFISRKFPFSQSIRAFEEAASGRPQDVKIQIEME 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 448,502
Number of extensions: 17178
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)