BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0097.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088...    80   9e-17
gi|300312345|ref|YP_003776437.1| cell wall surface anchor protei...    79   3e-16

>gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088
           [Herbaspirillum seropedicae SmR1]
          Length = 8016

 Score = 80.5 bits (197), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 1   VVVEDGERDPSAAAETSGSSGNTERPNFSPTRSPDNQSQIADAEINSQHEKNWGVQWPI 59
           ++  D E+DP AA ET+G+ GNT   ++SP RS DN+ Q+A+AEI+S+ EK+WGVQWPI
Sbjct: 118 IISPDDEKDPVAATETNGTGGNTNSTDYSPIRSTDNRKQLAEAEISSEKEKSWGVQWPI 176


>gi|300312345|ref|YP_003776437.1| cell wall surface anchor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 7175

 Score = 78.6 bits (192), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 40/59 (67%)

Query: 1   VVVEDGERDPSAAAETSGSSGNTERPNFSPTRSPDNQSQIADAEINSQHEKNWGVQWPI 59
           VV E GE+ P  A   +G  GN  +P  SP ++PD Q Q+AD EINS+ EKNWGVQWPI
Sbjct: 69  VVAEQGEKAPEVADPNTGVPGNIAQPESSPVKTPDMQKQMADVEINSRSEKNWGVQWPI 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.127    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 464,342
Number of extensions: 14407
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 128 (53.9 bits)