BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0092.p (426 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferas... 844 0.0 gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferas... 237 1e-63 gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate amino... 168 9e-43 gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferas... 165 5e-42 gi|300309354|ref|YP_003773446.1| 4-aminobutyrate aminotransferas... 162 3e-41 >gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 426 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/426 (95%), Positives = 421/426 (98%) Query: 1 MTSKATNQELQQRKNAATPRGVGVMCDFYAERASNAELWDVEGRRFIDFAAGIAVLNTGH 60 MTSKA NQELQQRKNAATPRGVGVMCDFYAERA+NAELWDVEGRRFIDFAAGIAVLNTGH Sbjct: 1 MTSKANNQELQQRKNAATPRGVGVMCDFYAERAANAELWDVEGRRFIDFAAGIAVLNTGH 60 Query: 61 RHPKLLDAMRAQLDKFTHTAYQIVPYASYVELAERINAVTPGNYPKKTAFFSTGAEAVEN 120 RHPKLLDAMRAQ+DKFTHTAYQIVPYASYVELAERIN +TPGNYPKKTAFFSTGAEAVEN Sbjct: 61 RHPKLLDAMRAQMDKFTHTAYQIVPYASYVELAERINRLTPGNYPKKTAFFSTGAEAVEN 120 Query: 121 AIKIARAHTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSALHG 180 AIKIARAHTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSALHG Sbjct: 121 AIKIARAHTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSALHG 180 Query: 181 ITTEDALDAVHGLFKSDIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRAICDEHGILLI 240 IT+EDAL+AV GLFKSDIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRA+CDEHGILLI Sbjct: 181 ITSEDALEAVKGLFKSDIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRALCDEHGILLI 240 Query: 241 ADEVQSGYGRTGKLFAMEHYDVLPDMMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGT 300 ADEVQSGYGRTGKLFAMEHYDVLPD+MTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGT Sbjct: 241 ADEVQSGYGRTGKLFAMEHYDVLPDLMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGT 300 Query: 301 YAGNPLAVASALAVLDVMEEEKLVARGQRLGDKLQEHLKELRSAVPQIAEVRGVGAMVAV 360 YAGNPLA+ASALAVLDVMEEE+LV RGQRLGDKLQEHLKELRS+VPQIAEVRGVGAMVAV Sbjct: 301 YAGNPLAIASALAVLDVMEEEQLVTRGQRLGDKLQEHLKELRSSVPQIAEVRGVGAMVAV 360 Query: 361 EFADPVTGKPDADYTKKVQQHALNNGLLLLSCGSYGNVIRFLFPLTIPDTVMDEALGILA 420 EFADP TGKPDA+YTKKVQQHALNNGLLLL+CGSYGNVIRFLFPLTIPDTVMDEALGILA Sbjct: 361 EFADPATGKPDAEYTKKVQQHALNNGLLLLTCGSYGNVIRFLFPLTIPDTVMDEALGILA 420 Query: 421 KAIKLA 426 KAI+LA Sbjct: 421 KAIRLA 426 >gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 456 Score = 237 bits (605), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/429 (35%), Positives = 231/429 (53%), Gaps = 21/429 (4%) Query: 9 ELQQRKNAATPRGVGVMCDFYAERASNAELWDVEGRRFIDFAAGIAVLNTGHRHPKLLDA 68 EL R + RG G M ++A D +G FID +AG+ V + G +P++++A Sbjct: 32 ELSARTESMA-RGGGRM-PIAMDQAFGVTFKDPDGNTFIDLSAGVGVSSVGRCNPRVVEA 89 Query: 69 MRAQLDKFTHTAYQIVPYASYVELAERINAVTPGNYPKKTAFFST--GAEAVENAIKIAR 126 +R Q + H+ V + ELA +I+ + P F T G++A+E A+K A+ Sbjct: 90 IRKQSESLMHSME--VNSSKRTELAAKISEIMPDGLRGDCITFFTQGGSDALEAAVKFAK 147 Query: 127 AHTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSAL-------H 179 TGR +IAF GG+HG ALT A Y+ GFGPF G V HAPYP A H Sbjct: 148 RVTGRHQIIAFHGGYHGIWNASNALTTGTA-YRKGFGPFMGGVIHAPYPYAYRFPFDTSH 206 Query: 180 GITTEDALDAVHGLFKSD-IEAKRVAAIILEPVQGEGGFYAAPADFMRGLRAICDEHGIL 238 + A + V L + A VAA+I+EPVQGEGG+ +F++ LR CD G L Sbjct: 207 KSAEQIAGEYVDYLLNTPYTAADDVAAVIVEPVQGEGGYVPPSPEFLQILRKACDRSGAL 266 Query: 239 LIADEVQSGYGRTGKLFAMEHYDVLPDMMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLG 298 LI DEVQ+G GRTGK++A+EH V PDM+T K + G MP++ + R+++ G Sbjct: 267 LIVDEVQAGAGRTGKMWAVEHSGVKPDMLTFGKGIGGDMPMAGLVMRSDLAAKIPDGSQP 326 Query: 299 GTYAGNPLAVASALAVLDVMEEEK--LVARGQRLGDKLQEHLKELRSAVPQIAEVRGVGA 356 T+A N ++ A AL + ++++ + LV R LG + QE ++ S P + EVRG G Sbjct: 327 NTFAANSISAAVALTNISILQDPRLDLVNRAHTLGLEAQERIRSFNS--PWVGEVRGRGL 384 Query: 357 MVAVEFADPVTGKPDADYTK--KVQQHALNNGLLLLSCGSYGNVIRFLFPLTIPDTVMDE 414 M+ +E + + K K+ + + +G+L++ CG Y NV+R + LTIP ++M + Sbjct: 385 MIGIELVENRETREPLSREKLGKLMDYVVGHGVLMIPCGRYTNVMRVMPSLTIPRSLMFK 444 Query: 415 ALGILAKAI 423 L I + Sbjct: 445 GLDIFGAGL 453 >gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 168 bits (425), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 140/411 (34%), Positives = 208/411 (50%), Gaps = 39/411 (9%) Query: 40 DVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQLDKFTHTAYQIVPYASYVELAERINAV 99 D G +D AG+ + GH HPK++ A++ + + + + S ELAER+ A Sbjct: 42 DDAGNTILDGTAGLWCVPLGHAHPKIVSAVQKSVATLDYAPSFQLGHPSAFELAERLKAY 101 Query: 100 TPGNYPKKTAFFSTGAEAVENAIKIARAH------TGRPGVIAFAGGFHGRTMMGMALTG 153 T GN + +G+EAV+ A+KIA A+ R +I G+HG GM++ G Sbjct: 102 T-GNRFGNVFYTGSGSEAVDTALKIALAYHRAKGNATRTRLIGRERGYHGVGFGGMSVGG 160 Query: 154 KVAPYK-LGFGPFPGDVFHAPYPSAL-----------HGITTEDALDAVHGLFKSDIEAK 201 K PG V H P+ L +G D L+ + L +A Sbjct: 161 IGGNRKTFSTALLPG-VDHLPHTHNLEKNAFTKGEPEYGAHLADELERLVTLH----DAS 215 Query: 202 RVAAIILEPVQGEGGFYAAPADFMRGLRAICDEHGILLIADEVQSGYGRTGKLFAMEHYD 261 +AA+I+EPV G G P +++ LR IC +HGILLI DEV +G+GR G FA +++D Sbjct: 216 NIAAVIVEPVAGSTGVLIPPKGYLKRLREICTKHGILLIFDEVITGFGRLGTPFASDYFD 275 Query: 262 VLPDMMTMAKSLAGG-MPLSAVNGRAEIMDA--PAPGGL----GGTYAGNPLAVASALAV 314 V PD+ T AK L G +P+ AV + EI DA P G+ G TY+G+PLA A+ LA Sbjct: 276 VEPDIFTTAKGLTNGVVPMGAVFVKPEIHDAFMNGPDGIELFHGYTYSGHPLACAAGLAS 335 Query: 315 LDVMEEEKLVARGQRLGDKLQEHLKELRSAVPQIAEVRGVGAMVAVEFADPVTGKPDAD- 373 L+V + E ++ Q + D QE LR +P + +VR +G + +E A + G+ A Sbjct: 336 LEVFQTEGVLENAQAVADYFQEAAHALR-GLPHVIDVRTIGLIAGIELAS-IPGRVGARA 393 Query: 374 YTKKVQQHALNNGLLLLSCGSYGNVIRFLFPLTIPDTVMDEALGILAKAIK 424 Y V+ A N+G+L+ G++I PL I +DE G LA +K Sbjct: 394 YDAFVR--AFNDGILIRVT---GDIIALSPPLIINKQQIDELFGKLAAILK 439 >gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 165 bits (418), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 133/401 (33%), Positives = 202/401 (50%), Gaps = 48/401 (11%) Query: 38 LW--DVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQLDKFTHTAYQIVPYASYVELAER 95 +W D G+R++D+ G AV GH + DA+ AQ K + + S +ELA+ Sbjct: 28 MWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADALAAQSKKLINPSPAFYNEPS-IELAKL 86 Query: 96 INAVTPGNYPKKTAFFSTGAEAVENAIKIARAH---------TGRPGVIAFAGGFHGRTM 146 + A + + F ++G EA E AIK+AR + R +I F FHGRT+ Sbjct: 87 LTA---NSVFDRVFFANSGGEANEGAIKLARKWGKKNPAADGSARFEIITFKHSFHGRTL 143 Query: 147 MGMALTGKVAPYKLGFGP-FPGDVFHAPYPSALHGITTEDALDAVHGLFKSDIEAKRVAA 205 M+ +GK + F P PG +P A+ + L++V L + A Sbjct: 144 ATMSASGKDG-WDTMFAPQVPG------FPKAVL-----NDLESVKALI-----GEHTVA 186 Query: 206 IILEPVQGEGGFYAAPADFMRGLRAICDEHGILLIADEVQSGYGRTGKLFAMEHYDVLPD 265 ++LEPVQGEGG A +FM+GLR++ E +LLI DEVQSG GRTG+LFA +H + PD Sbjct: 187 VMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAYQHSGIEPD 246 Query: 266 MMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGTYAGNPLAVASALAVLDVMEEEKLVA 325 +MT+AK + GG+PL+A+ R EI A G GGTY GNPL A +AV+ + + + Sbjct: 247 IMTLAKGIGGGVPLAALLAREEIACFEA-GEQGGTYNGNPLMTAVGVAVIKELLKPGFME 305 Query: 326 RGQRLGDKLQEHLKELRSAVPQIAEVRGVGAMVAVEFADPVTGKPDADYTKKVQQHALN- 384 + G L++ E+ E RG G + A++ D ++ + A N Sbjct: 306 SVRERGQYLRQRSLEISEKYGFEGE-RGEGLLRALQLGR--------DIGPQIVEAARNL 356 Query: 385 --NGLLLLSCGSYGNVIRFLFPLTIPDTVMDEALGILAKAI 423 GLLL S N++RF+ L + +D+ +L + + Sbjct: 357 EPVGLLLNS--PRPNLLRFMPALNVTKEEIDQMFSMLEEVL 395 >gi|300309354|ref|YP_003773446.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 162 bits (411), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 132/414 (31%), Positives = 201/414 (48%), Gaps = 23/414 (5%) Query: 2 TSKATNQELQQRKNAATPRGVGVMCDFYAE-----RASNAELWDVEGRRFIDFAAGIAVL 56 T+ AT +++R+N G GV FY + AS L D +G ++D A V Sbjct: 21 TAPATRALIERRRNTF---GDGVPL-FYRDPVHFVSASGVWLRDQDGLEYLD--AYNNVP 74 Query: 57 NTGHRHPKLLDAMRAQLDKF-THTAYQIVPYASYVELAERINAVTPGNYPKKTAFFSTGA 115 + GH HP++++A+ Q THT Y SY AER+ P K F S+G Sbjct: 75 SVGHCHPRVVEAVSKQAATLNTHTRYLSDVVTSY---AERLLGTLPREL-SKVLFTSSGT 130 Query: 116 EAVENAIKIARAHTGRPGVIAFAGGFHGRTMMGMALTGKVAP-YKLGFGPFPGDVFHAPY 174 E+V+ A+++AR +TG G I +HG + +T P +G D Sbjct: 131 ESVDLAMRLARLYTGGSGFIVTRFAYHGHSTAVAEITPAFGPGVPIGINVRLVDAPDGYR 190 Query: 175 PSALHGIT-TEDALDAVHGLFKSDIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRAICD 233 A GI +D A+ + + I R A +IL+ V G + P F++ A Sbjct: 191 QDAPVGIKFAQDVAAAIADMERHGI---RFAGLILDTVCSSDGLFVDPPGFLKDAIATVK 247 Query: 234 EHGILLIADEVQSGYGRTGK-LFAMEHYDVLPDMMTMAKSLAGGMPLSAVNGRAEIMDA- 291 + G + IADEVQ G+GRTG+ ++ E + ++PD++ M K + GMP++A RA+IM A Sbjct: 248 KAGGVFIADEVQPGFGRTGEGMWGFERHRIVPDIVVMGKPMGNGMPIAATVTRADIMQAF 307 Query: 292 PAPGGLGGTYAGNPLAVASALAVLDVMEEEKLVARGQRLGDKLQEHLKELRSAVPQIAEV 351 G T+ GN + A+A AVLDV+E E L+ + G L+ L++L+ I +V Sbjct: 308 TERSGYFNTFGGNTVCCAAASAVLDVIESEGLINNAKETGASLKLGLEQLKGQHQCIGDV 367 Query: 352 RGVGAMVAVEFADPVTGKPDADYTKKVQQHALNNGLLLLSCGSYGNVIRFLFPL 405 R +G AVEF P T D D V +L+ +CG GN+++ PL Sbjct: 368 RAIGLYAAVEFVLPDTKTADTDMALHVVNTLRQKRILISTCGPAGNILKIRPPL 421 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,331,231 Number of extensions: 58123 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 10 Length of query: 426 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 338 Effective length of database: 1,203,190 Effective search space: 406678220 Effective search space used: 406678220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)