BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0091.p (379 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 743 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 259 3e-70 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 257 8e-70 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 239 2e-64 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 237 1e-63 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/379 (95%), Positives = 365/379 (96%), Gaps = 4/379 (1%) Query: 1 MAAYAMKQAAQAHAPATGSGNDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPS 60 MAAYAMKQAAQ + DVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPS Sbjct: 2 MAAYAMKQAAQESVQQS----DVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPS 57 Query: 61 GSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAY 120 GSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAY Sbjct: 58 GSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAY 117 Query: 121 PLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMD 180 PLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMD Sbjct: 118 PLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMD 177 Query: 181 EPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPV 240 EPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPV Sbjct: 178 EPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPV 237 Query: 241 TELYEYPDNQFVANFIGDNNRLKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQSITA 300 TELYEYPDNQFVANFIGDNNR KGSVESVQGEHCTVRL DG +TGLNVHRAHAGQSITA Sbjct: 238 TELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCTVRLTDGAALTGLNVHRAHAGQSITA 297 Query: 301 CVRPERIRLAAGGSAEPNSIRATIAGLIYFGDHVRVRCTVTGQEDCFVKLSLSDPALAGL 360 CVRPERIRLAAGGSAEPNSIRA+IAGLIYFGDHVRVRCTV GQEDCFVKLSLSDPAL+GL Sbjct: 298 CVRPERIRLAAGGSAEPNSIRASIAGLIYFGDHVRVRCTVAGQEDCFVKLSLSDPALSGL 357 Query: 361 SEGSSVVLHVAQDRLRCFL 379 SEGSSVVLHVAQDRLRCFL Sbjct: 358 SEGSSVVLHVAQDRLRCFL 376 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 259 bits (662), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 137/293 (46%), Positives = 188/293 (64%), Gaps = 6/293 (2%) Query: 25 VQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 84 VQ VKK + G I++ +D+DI GEF L+GPSG GK+T L MLAG E TGGEI + Sbjct: 4 VQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 85 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQ 144 G ++N V P R+I MVFQNYAL+PHMT+ N+A+ L++ K D+A + +VK+A D++ Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILG 122 Query: 145 MGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKR 204 + + DRYP QLSGGQ+QRVA+ R +V DPQ+ L DEPL LD +LR M+ E+K LH+R Sbjct: 123 LNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQR 182 Query: 205 LGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDN--NRL 262 L T +YVTHDQ EA+TM+D++ V G+++Q +LY+YP N FVA FIG N + Sbjct: 183 LKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMNFI 242 Query: 263 KGSVESVQGEHCTVRLADGTVVTGL--NVHRAHAGQSITACVRPERIRLAAGG 313 ++ V ADGT V + + GQ +T VRPE + + A G Sbjct: 243 PATLRR-NATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAG 294 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 257 bits (657), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 135/312 (43%), Positives = 192/312 (61%), Gaps = 9/312 (2%) Query: 38 NLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL------DGQLLNR 91 N I+K + ++++RGE + LLGPSGSGKTT L +AG E P G I + DG Sbjct: 20 NPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFE 79 Query: 92 VPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDR 151 +P +RN+G+VFQ+YAL+PH T+A NVAY L +RK +VK L + +G G+R Sbjct: 80 MPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHLGER 139 Query: 152 YPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVY 211 YP QLSGGQQQRVA+AR LV++PQ++L+DEPL LD +LRE + L+ L RLG++ + Sbjct: 140 YPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALM 199 Query: 212 VTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRLKGSVESVQG 271 VTHDQ EA+ +SDR+ + + G I+Q +Y+ P+ F A F+G NN+L V S +G Sbjct: 200 VTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAAEVLSREG 259 Query: 272 EHCTVRLADGTVVTGLNVHR-AHAGQSITACVRPERIRLAAGGSAEPNSIRATIAGLIYF 330 E TV+L GT V L G+ +T +R E++R++ G A N+IR ++ +Y Sbjct: 260 ERVTVKLDGGTAVATLRGRSDVRPGEQLTGIIRVEQVRIS--GEASDNAIRLPLSTCMYL 317 Query: 331 GDHVRVRCTVTG 342 GD V G Sbjct: 318 GDRWECLFKVDG 329 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 239 bits (611), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 130/330 (39%), Positives = 192/330 (58%), Gaps = 9/330 (2%) Query: 23 VLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFP-TGGE 81 V ++ K++ ++ LDL I GE L LLGPSG GKTT L M+AG EFP GG Sbjct: 8 VSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGR 67 Query: 82 IRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALD 141 + + + +P KR +GMVFQNYALFP+M++ +N+AY + +RK+ R +V++ L+ Sbjct: 68 VLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLE 127 Query: 142 MVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKAL 201 MV + R QLSGGQ+QRVALAR L +P+++L+DEPL ALD +LRE ++ +L L Sbjct: 128 MVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKL 187 Query: 202 HKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNR 261 + LG+T +YVTHDQ EA+ + DR+ V ++G I Q+ E+Y +P N FVA FIG NR Sbjct: 188 LRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNR 247 Query: 262 LKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQSITACVRPERIRLAAGGSAEPNSIR 321 + G V + ++L GT+ + A AGQ A RPE + + A+ + +R Sbjct: 248 VDGIVAGDR-----LQLPTGTLPLPPD---AVAGQPAQALFRPEDVEVIDITEADAHCLR 299 Query: 322 ATIAGLIYFGDHVRVRCTVTGQEDCFVKLS 351 + + GD R + + + S Sbjct: 300 GKLINTFFLGDRTRFEIEIGAERPVIAETS 329 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 237 bits (604), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 133/358 (37%), Positives = 202/358 (56%), Gaps = 13/358 (3%) Query: 25 VQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 84 V + K YD +N ++++++L+I GEF+ +GPSG GK+T L M+AG E + G++ + Sbjct: 4 VSIRNLAKRYD-DNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDI 62 Query: 85 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQ 144 + +N VP KR + MVFQ+YAL+PHM++ N+A+ L + +A +A V+ A ++ Sbjct: 63 GARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKILH 122 Query: 145 MGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKR 204 + DR P LSGGQ+QRVA+ R + P + L DEPL LD LR M+LE LH Sbjct: 123 IDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDD 182 Query: 205 LGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDN--NRL 262 L T +YVTHDQ EA+T++D++ V +G I+Q+ +LY +P N+FVA FIG N + Sbjct: 183 LKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMNFI 242 Query: 263 KGSVESVQGEHCTVRLADGTV-VTGLNVHRAHAGQSITACVRPERIRLAAGGSAEPNSIR 321 G+V ++Q + V+L G + ++ GQ +T VRPE + +A G +A ++ Sbjct: 243 DGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQAA----LQ 298 Query: 322 ATIAGLIYFGDHVRVRCTVTGQEDCFVKLSLSDPALAGLSEGSSVVLHVAQDRLRCFL 379 A L GD + G ED + L + D L VL +A D RC L Sbjct: 299 ARCTALELLGDFSYLYAAYEGSEDALI-LRVPD----SLDAPHGSVLPLAADPARCHL 351 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,128,254 Number of extensions: 46570 Number of successful extensions: 545 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 333 Number of HSP's successfully gapped: 147 Length of query: 379 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 292 Effective length of database: 1,207,925 Effective search space: 352714100 Effective search space used: 352714100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)