BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0086.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309844|ref|YP_003773936.1| glutamine amidotransferase [Her...    65   6e-12
gi|300309390|ref|YP_003773482.1| glutamine amidotransferase [Her...    64   1e-11

>gi|300309844|ref|YP_003773936.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score = 64.7 bits (156), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 4/194 (2%)

Query: 1   MRPIAILQHESTQGPGVLLDHLEQHALPYRLFHPAAEGNAPRDASQFSGIVTLGSD-HSV 59
           M+    L+H   +  G+L   L  H    R      E      A Q   ++ LG    + 
Sbjct: 1   MKEAIALRHVHFEDVGILDSLLASHGYRLRYIDATIEQADTAAAEQADLLIVLGGPIGAY 60

Query: 60  NEDL-PWIHAEHALLQDALARDVPVLGHCFGAQLLARSMGAQVSRNLCANIGWSPVWVTP 118
           +E L P++  E  L+   L +  P+LG C GAQL+AR++GA+V+      IG++P+ ++ 
Sbjct: 61  DEGLHPFLLRELDLIARRLQQQRPLLGICLGAQLIARALGAEVAPMGLKEIGYAPLDLST 120

Query: 119 PAQQR-MGLARQVTIFNWHYDTFEIPTGAVRTMYGSHCLNKGFMRGKQ-WGFQGHLEVTE 176
             +   +       + +WH D F IP GA        C ++ F  G      Q HLE   
Sbjct: 121 EGRLSPLAALEGQPVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQFHLEADP 180

Query: 177 ESVRNWCAAGRDEL 190
             +  W      EL
Sbjct: 181 ARINQWLVGHACEL 194


>gi|300309390|ref|YP_003773482.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 8/141 (5%)

Query: 50  IVTLGSDHSV--NEDLPWIHAEHALLQDALARDVPVLGHCFGAQLLARSMGAQVSRNLCA 107
           ++ LG   +V   E  PW+ AE A L+  L  D+P LG   GAQL+A ++ A+V    C 
Sbjct: 51  LIVLGGPIAVYDTEAYPWLRAEIAWLRARLLEDLPTLGLGLGAQLMAAALHARVYPGSCG 110

Query: 108 N-IGWSPVWVTPPAQQ----RMGLARQVTIFNWHYDTFEIPTGAVRTMYGSHCLNKGFMR 162
             IGWS +   P   +    R  + ++  + +WH DTF++P GA          ++ F  
Sbjct: 111 KEIGWSRLQAGPHLDEHAWLRQLVDQETRVLHWHGDTFDLPRGARHLASSDMYPHQAFAW 170

Query: 163 GKQ-WGFQGHLEVTEESVRNW 182
           G+     Q H EV   +V  W
Sbjct: 171 GRHCLALQFHPEVDVRTVEQW 191


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 879,928
Number of extensions: 38776
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)