BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0082.p
         (497 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310407|ref|YP_003774499.1| pyridoxamine 5'-phosphate oxida...   490   e-139

>gi|300310407|ref|YP_003774499.1| pyridoxamine 5'-phosphate
           oxidase-like, FMN-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 257/320 (80%), Positives = 277/320 (86%)

Query: 1   MSASPKSPVWHAGEKQLQAQLGVADKMESVGQRVIRDFMPEQHRDFYGQLPFIVVGSVDP 60
           MS S    VWHAGE+ LQAQLGVADKM+++GQRV+R  MP+QHRDFY QLPFIV+GSVDP
Sbjct: 1   MSTSSSPSVWHAGEQMLQAQLGVADKMQALGQRVVRTVMPDQHRDFYRQLPFIVLGSVDP 60

Query: 61  SGDAWATFLEGRPGFLASPSPTRLDMHARPAAEDPAAAGMSAGAPVGLLGIEMHTRRRNR 120
            GDAWAT LEG+PGFL SPSP +LDMHA PA  DPAAAGM+AGAPVGLLGIEMHTRRRNR
Sbjct: 61  VGDAWATLLEGQPGFLTSPSPVQLDMHAHPAPADPAAAGMAAGAPVGLLGIEMHTRRRNR 120

Query: 121 MNGVLAPLADGWRVQVDQSFGNCPRYIQLRDYSFAREPAEAHTGQAETLSTLDAPALALI 180
           MNGVLA L  GWRVQV+QSFGNCPRYIQLRDYSFAR+PA+ H GQ E L+TLDA A  LI
Sbjct: 121 MNGVLAELEQGWRVQVEQSFGNCPRYIQLRDYSFARDPAQDHPGQPELLATLDASARELI 180

Query: 181 AGADTFFVATYADQEGRRQVDVSHRGGKPGFVRVDEAGVLTVPDFNGNLFFSTLGNIVLN 240
             AD FFVATYAD + RRQVDVSHRGGK GFVRVD  GVLTVPDFNGNLFFSTLGNIVLN
Sbjct: 181 GMADAFFVATYADVDERRQVDVSHRGGKAGFVRVDAEGVLTVPDFNGNLFFSTLGNIVLN 240

Query: 241 GHAGLLFVDYASGDVLQMTGQAEVILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRWA 300
           G AGLLFVDYA+GDVLQM+GQAE+ILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRW 
Sbjct: 241 GRAGLLFVDYANGDVLQMSGQAELILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRWR 300

Query: 301 FQEHAFSSYALMTGDWQQAA 320
           FQE  +S Y L TG W +AA
Sbjct: 301 FQEQGWSPYVLATGQWPRAA 320


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,566,432
Number of extensions: 68194
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,198,455
Effective search space: 488969640
Effective search space used: 488969640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)