BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0076.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...   669   0.0  
gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...    62   5e-11

>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/359 (91%), Positives = 343/359 (95%)

Query: 1   MTLTSSLRRAARLLLTSATLLLAAVPLHAAEPPKPVEGSWVAPRFQFHTGQTLDNLRLHY 60
           MTLT  LR  ARLLL+SA L+L +    AA+PP+PVEG WVAPRFQFHTGQTL+NLRLHY
Sbjct: 1   MTLTFRLRHVARLLLSSAALMLCSAATQAADPPRPVEGDWVAPRFQFHTGQTLENLRLHY 60

Query: 61  VTLGERSNPAVLVLHGTYQSAGAMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSTK 120
           VTLG+R+NPAVLVLHGTYQSA AMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKS+K
Sbjct: 61  VTLGDRANPAVLVLHGTYQSAQAMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSSK 120

Query: 121 PSDGLRAAFPQYNYDDMVLAQYRMLTEGMGISHLRLIIGNSMGGMQTWIWGGTYPGFADG 180
           PSDGLRAAFPQYNY DMVLAQYRMLTEGMGI+HLRLIIGNSMGGMQTWIWGGTYPGFADG
Sbjct: 121 PSDGLRAAFPQYNYADMVLAQYRMLTEGMGITHLRLIIGNSMGGMQTWIWGGTYPGFADG 180

Query: 181 LVPMASQPTEMASRNWMMRRMLVESIKQDPAWNNGNYTTQPPSLRLANNMFVFATNGGTL 240
           LVPMASQPTEMASRNWMMRRMLVESIKQDPAWNNGNYTTQPPSLRLANNMFVFATNGGTL
Sbjct: 181 LVPMASQPTEMASRNWMMRRMLVESIKQDPAWNNGNYTTQPPSLRLANNMFVFATNGGTL 240

Query: 241 AYQAIAGTHAQADKLVDERLAAPVTADANDFIYQWGSSADYNAAPGLSKIKVPVLAINSA 300
           AYQA+AG+HAQADKLVDERLAAPVTADANDFIYQWGSSADYNAAPGLSKIK PVLAINSA
Sbjct: 241 AYQAMAGSHAQADKLVDERLAAPVTADANDFIYQWGSSADYNAAPGLSKIKAPVLAINSA 300

Query: 301 DDERNPPETGIMQAALKEVPGAQLLLIPASAETRGHGTTGMARFYVRELTQFIQGLPAR 359
           DDERNPPETG+MQAALKEVP AQLLLIPASAETRGHGTTGMARFYVREL QFI+GLPAR
Sbjct: 301 DDERNPPETGVMQAALKEVPSAQLLLIPASAETRGHGTTGMARFYVRELEQFIKGLPAR 359


>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 34/210 (16%)

Query: 27  LHAAEPPKPVEGSWVAPRFQFHTGQTLDNLRLHYVTLG----ERSNPAVLVLHG---TYQ 79
           +H AEP  P++G           G  L +  L Y T G    ++SN AVLV H    ++ 
Sbjct: 11  MHFAEP-LPLQG-----------GSALADYSLTYETYGTLNADKSN-AVLVCHALNASHH 57

Query: 80  SAGAMLSK----DFGGQLFGPGQPLDASKYFIIIPDGIGVGKST------KPSDG--LRA 127
            AG          +   + GPG+ LD  ++F+I  + +G    +       P+ G    A
Sbjct: 58  VAGVYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKPYGA 117

Query: 128 AFPQYNYDDMVLAQYRMLTEGMGISHLRLIIGNSMGGMQTWIWGGTYPGFADGLVPMASQ 187
            FP    +D V AQ R L + +GI+    ++G S+GGMQ   W   YP      + +AS 
Sbjct: 118 DFPVVTVEDWVNAQAR-LADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLRHCLVIAST 176

Query: 188 PTEMASRNWMMRRMLVESIKQDPAWNNGNY 217
           P +++++N     +  ++I  DP ++ G++
Sbjct: 177 P-KLSAQNIAFNDVARQAILTDPQYHGGDF 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,241,057
Number of extensions: 56707
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)