BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0069.p (87 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 164 1e-42 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 90 4e-20 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 83 5e-18 gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [H... 82 1e-17 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 80 2e-17 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 164 bits (415), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 77/87 (88%), Positives = 85/87 (97%) Query: 1 MQVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGI 60 M+VLIFDEPTRGIDVGAK+EIYQLMREFTAQGYSI+MISSELPEVVGM+DRVCVF+GGGI Sbjct: 420 MKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGI 479 Query: 61 VATVEGDAVTAEEIMTHATTGRLHHAA 87 VAT+EG+AV AEEIMTHATTGR+ HAA Sbjct: 480 VATLEGEAVNAEEIMTHATTGRIRHAA 506 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 89.7 bits (221), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 42/78 (53%), Positives = 57/78 (73%) Query: 2 QVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIV 61 +VLI DEPTRG+D+ AK+EIYQL+ +QG ++++ISSELPEV+G+ DRV V + G I Sbjct: 421 KVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMIT 480 Query: 62 ATVEGDAVTAEEIMTHAT 79 + G A+T E IM AT Sbjct: 481 GELAGAAITQENIMRLAT 498 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 82.8 bits (203), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 43/77 (55%), Positives = 52/77 (67%) Query: 3 VLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVA 62 +L FDEPTRGIDVGAK+EIY+L+ QG +I+MISSELPEV+ MS RV V G I Sbjct: 436 ILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITG 495 Query: 63 TVEGDAVTAEEIMTHAT 79 + T E+IM AT Sbjct: 496 ELARADATQEKIMQLAT 512 Score = 54.3 bits (129), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 42/63 (66%) Query: 2 QVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIV 61 +VLI DEPT ++ AE+++++R+ AQG I+ IS ++ E+ ++DRV V + G + Sbjct: 180 RVLIMDEPTAALNNAEIAELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYI 239 Query: 62 ATV 64 ATV Sbjct: 240 ATV 242 >gi|300310371|ref|YP_003774463.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 81.6 bits (200), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 40/74 (54%), Positives = 50/74 (67%) Query: 2 QVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIV 61 +VLI DEPTRGIDVGAK EIY ++ + A+G IIMISSE+PE++GM DR+ V G V Sbjct: 427 EVLILDEPTRGIDVGAKFEIYNIISKLAAEGKCIIMISSEMPELLGMCDRIYVMNEGQFV 486 Query: 62 ATVEGDAVTAEEIM 75 + T E IM Sbjct: 487 GHLPKAEATQENIM 500 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 80.5 bits (197), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 40/77 (51%), Positives = 53/77 (68%) Query: 2 QVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIV 61 +VLI DEPTRG+DVGAKAEIY+L+ E G +IIM+SSEL EV+G+SDRV V G + Sbjct: 427 KVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVLVIGEGRLR 486 Query: 62 ATVEGDAVTAEEIMTHA 78 D ++ E ++ A Sbjct: 487 GDFVNDNLSQETVLAAA 503 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 261,255 Number of extensions: 8572 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 10 Length of query: 87 Length of database: 1,619,870 Length adjustment: 57 Effective length of query: 30 Effective length of database: 1,349,975 Effective search space: 40499250 Effective search space used: 40499250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)