BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0065.p (199 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 97 1e-21 gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 93 1e-20 gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herba... 92 4e-20 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 90 1e-19 gi|300313109|ref|YP_003777201.1| short-chain alcohol dehydrogena... 89 2e-19 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 10/170 (5%) Query: 37 RWGRVDVLVNSAGHGPRAPILDITDEDWHRGMDTYLLNVIRPTRLVTPLMQAQGGGAIIN 96 ++GR+D+LVN+AG A +L+IT +D+ R +D L + ++ V P MQAQ G+I+ Sbjct: 78 QFGRIDILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTLYMSQAVLPAMQAQQSGSIVC 137 Query: 97 ISSAWAFEPSDMF--PTSAVFRAGLAAFIKLFADKYAPENIRINNVLPGWID-------- 146 ISS A + P + +AG+ + A ++ P+ IR+N + PG I Sbjct: 138 ISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLISTDINKDIL 197 Query: 147 SLPQREERRAGVPMQRYGTSEEVAATIAFLASSGAGYITGQNIKVDGGLM 196 S ++ E +P+ R G ++V FLAS + Y TG + V+GG++ Sbjct: 198 SAEKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVNGGML 247 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 10/170 (5%) Query: 37 RWGRVDVLVNSAGHGPRAPILDITDEDWHRGMDTYLLNVIRPTRLVTPLMQAQGGGAIIN 96 ++GR+D+LVN+AG L+IT D+ R +D L + ++ V P M+AQ G+II Sbjct: 78 QFGRIDILVNNAGITQPVKTLEITGADYDRILDVSLRGTLYMSQAVLPAMRAQQNGSIIC 137 Query: 97 ISSAWAFEPSDMF--PTSAVFRAGLAAFIKLFADKYAPENIRINNVLPGWI--DSLPQR- 151 ISS A + P + +AG+ + A ++ PE IR+N++ PG I D + + Sbjct: 138 ISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRVNSITPGLIGTDIIKGKL 197 Query: 152 -EERRA----GVPMQRYGTSEEVAATIAFLASSGAGYITGQNIKVDGGLM 196 EE++A +P+ R G ++++ FL S + Y TG + V+GG++ Sbjct: 198 TEEKKAEIAETIPLARLGRADDIGGACVFLGSDLSQYCTGITLDVNGGML 247 >gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 97/177 (54%), Gaps = 15/177 (8%) Query: 31 VDQAVARWGRVDVLVNSAGH-GPRAPILDITDEDWHRGMDTYLLNVIRPTRLVTPLMQAQ 89 V +AVA+ GR+DVL+N+AG RAP+ +TDE + ++ +V+ TR V P+M+AQ Sbjct: 75 VAKAVAQMGRIDVLINNAGALVKRAPLETVTDELFDDIININARSVVAFTRAVIPVMRAQ 134 Query: 90 GGGAIINISSAWAFEPSDMFPTSAVFRAG---LAAFIKLFADKYAPENIRINNVLPGWI- 145 GGG IIN++S A P + ++ A ++ + A + + IR+N V PG I Sbjct: 135 GGGNIINVTSVAARHGGG--PGALIYAASKGFVSTLTRGMAKELLADKIRVNAVAPGVIM 192 Query: 146 -------DSLPQREERRAGVPMQRYGTSEEVAATIAFLASSG-AGYITGQNIKVDGG 194 + Q E R +PM R G +E + +LAS +GY+TGQ I V+GG Sbjct: 193 TPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLASEQMSGYVTGQIIDVNGG 249 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 92/175 (52%), Gaps = 11/175 (6%) Query: 30 LVDQAVARWGRVDVLVNSAGHGPRAPILDITDEDWHRGMDTYLLNVIRPTRLVTPLMQAQ 89 LV+Q +G + +LVN+AG + + DE+W + T L V R +R V M Sbjct: 76 LVEQVQKDFGSLSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLRGMMKA 135 Query: 90 GGGAIINISS--AWAFEPSDMFPTSAVFRAGLAAFIKLFADKYAPENIRINNVLPGWIDS 147 G IINI+S A P M +A +AG+A + A + NI +N V PG+ID+ Sbjct: 136 RTGRIINITSVVGEAGNPGQMNYAAA--KAGVAGMSRALAREIGSRNITVNCVAPGFIDT 193 Query: 148 LPQR---EERRAGV----PMQRYGTSEEVAATIAFLASSGAGYITGQNIKVDGGL 195 R E++ A + P+ R G +EE+A +AFLAS A YITG + V+GG+ Sbjct: 194 DMTRALNEQQSAAILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGM 248 >gi|300313109|ref|YP_003777201.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 266 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 18/187 (9%) Query: 26 DLQKLVDQAVARWGRVDVLVNSAGHGPRAPILDITDEDWHRGMDTYLLNVIRPTRLVTPL 85 +++ + + A+ +GRVDVL N+ G ++ ++E W+R + ++ + V P+ Sbjct: 75 EVKAIAEAAMDHFGRVDVLHNNVGIADVGGPVETSEESWNRLVAVNQTSLFLTHKHVLPI 134 Query: 86 MQAQGGGAIINISSAWAFEPSDMFPT--SAVFRAGLAAFIKLFADKYAPENIRINNVLPG 143 M+ Q GAI+NISS A FP +A + AF K A +YAP IR N VLPG Sbjct: 135 MEKQRKGAIVNISSLAALRWIG-FPYLGYTATKAAILAFTKNVAMQYAPMGIRANCVLPG 193 Query: 144 WIDSLPQRE---------------ERRAGVPMQRYGTSEEVAATIAFLASSGAGYITGQN 188 +D+ RE +R A PM G + +VA FLAS A YITG + Sbjct: 194 MMDTPMIREPLKASYGGDIEQMRAKRNAQCPMGFMGDAWDVAHASLFLASDHARYITGLD 253 Query: 189 IKVDGGL 195 + VDGGL Sbjct: 254 MIVDGGL 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 653,771 Number of extensions: 28292 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 33 Length of query: 199 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 118 Effective length of database: 1,236,335 Effective search space: 145887530 Effective search space used: 145887530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)