BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0064.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase [Herbaspi...   407   e-115
gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner m...    75   3e-15
gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894...    71   8e-14

>gi|300310393|ref|YP_003774485.1| Mg2+ transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  407 bits (1046), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/225 (95%), Positives = 220/225 (97%)

Query: 14  DTSISLTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMANRMGGHEGAVHVVA 73
           DT ISLTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMANR+ GHEGAVHVVA
Sbjct: 14  DTFISLTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMANRLAGHEGAVHVVA 73

Query: 74  YVVSGVGFLGAGAIMREEGNVRGINTAATLWGSAAVGAAAGADLILEAILATLFVLAANT 133
           YVVSGVGFLGAG IMREEGNVRGINTAATLWGSAAVGAAAGADLILEAILAT+FVLAANT
Sbjct: 74  YVVSGVGFLGAGVIMREEGNVRGINTAATLWGSAAVGAAAGADLILEAILATIFVLAANT 133

Query: 134 LLRPVVNTINRKPLDVPSVEVTNTLHLIVESAHQKRVLSAVTDMLEQSRHPMQDLDVRPF 193
           LLRPVVNTINRKPLDVPSVEVTNTLHLIVESAHQKRVL+AVTDMLEQSRHP  DL+VRPF
Sbjct: 134 LLRPVVNTINRKPLDVPSVEVTNTLHLIVESAHQKRVLAAVTDMLEQSRHPTHDLEVRPF 193

Query: 194 TDDEVEIEATLAATSVDGDELDALVERMLALPAVKQAFWTPSTTD 238
           TDDEVEIEATLAATSVDGDELDALVER+LALPAVKQAFW+PSTTD
Sbjct: 194 TDDEVEIEATLAATSVDGDELDALVERLLALPAVKQAFWSPSTTD 238


>gi|300309896|ref|YP_003773988.1| Mg(2+) transport ATPase inner
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score = 75.5 bits (184), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 8/130 (6%)

Query: 17  ISLTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFV-----DMANRMGGHEGAV-- 69
           + LT + +LG LIG+ER+     AGLRT++LV++G+ + +       AN +   +  +  
Sbjct: 9   LRLTVSAVLGSLIGIERERLSWAAGLRTHMLVSVGSTLIMLVSAYGFANILQSDKVVLDP 68

Query: 70  -HVVAYVVSGVGFLGAGAIMREEGNVRGINTAATLWGSAAVGAAAGADLILEAILATLFV 128
             + A VVSG+GFLGAG+I+     +RG+ TAA+LW  AA+G A G  + + A+  T  V
Sbjct: 69  SRMAAQVVSGIGFLGAGSILLRGEIIRGLTTAASLWTVAAIGLAVGGGMYVAAVAGTFIV 128

Query: 129 LAANTLLRPV 138
           L     ++P+
Sbjct: 129 LLILAGMKPL 138


>gi|300312202|ref|YP_003776294.1| hypothetical protein Hsero_2894
           [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score = 70.9 bits (172), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 10/136 (7%)

Query: 19  LTAAFILGGLIGLERQYRQRTAGLRTNVLVALGAAVFVDMA--NRMGGHE-----GAVHV 71
           L  A ++G  IG++R  R +  G++T  LVALG+A+ V MA  N   G E          
Sbjct: 25  LLFAMLIGCAIGIDRNLRGKPTGMKTLGLVALGSAL-VTMAAMNFALGAEDHNRDAVSRA 83

Query: 72  VAYVVSGVGFLGAGAIMREEG--NVRGINTAATLWGSAAVGAAAGADLILEAILATLFVL 129
           +  V++G+GFLGAG I+ E+    VRG+ TAA++W +AAVG   GA     A++AT  +L
Sbjct: 84  IQGVITGIGFLGAGVIIHEQWTEKVRGLTTAASIWVTAAVGIVCGAGWWQVALMATGLIL 143

Query: 130 AANTLLRPVVNTINRK 145
               + RP+   ++R+
Sbjct: 144 ILFVIGRPLEQFLHRQ 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 547,455
Number of extensions: 17636
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 3
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)