BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0060.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310390|ref|YP_003774482.1| lipoprotein [Herbaspirillum ser...   339   7e-95

>gi|300310390|ref|YP_003774482.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 189

 Score =  339 bits (870), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 172/189 (91%), Positives = 180/189 (95%)

Query: 1   MNAKLMRTGLPARLWKGIALALLALVLGGCASQQISDYAGKTPVFDPAVFFKGRTEAWGM 60
           M  KLMR GLPA+LW  + LALLALVLGGCASQQ+SDYAGKTPVFDPAVFFKGRTEAWGM
Sbjct: 1   MQIKLMRQGLPAQLWHWMGLALLALVLGGCASQQLSDYAGKTPVFDPAVFFKGRTEAWGM 60

Query: 61  FQKRGGEVARRFHVVVTGTVDGNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDV 120
           FQKRGGEVARRFHVVVTG+V+GNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDV
Sbjct: 61  FQKRGGEVARRFHVVVTGSVEGNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDV 120

Query: 121 IGEAIGHTAGNALHWNYTLLLPVNDKQYEVQMDDWMYQMDERTLINRTSMSKFGVEVGQV 180
           IGEAIG TAGNALHWNYTLLLPV +KQYE+QMDDWMYQMDERTLINRTSMSKFG+EVGQV
Sbjct: 121 IGEAIGQTAGNALHWNYTLLLPVGEKQYEMQMDDWMYQMDERTLINRTSMSKFGIEVGQV 180

Query: 181 TLFFRKEGV 189
           TLFFRKEG 
Sbjct: 181 TLFFRKEGA 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,844
Number of extensions: 24980
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)