BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0059.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310389|ref|YP_003774481.1| cyclopropane-fatty-acyl-phospho...   761   0.0  
gi|300310016|ref|YP_003774108.1| cyclopropane-fatty-acyl-phospho...   174   1e-44

>gi|300310389|ref|YP_003774481.1|
           cyclopropane-fatty-acyl-phospholipid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/403 (92%), Positives = 388/403 (96%)

Query: 1   VNRIPALQTTGRRAGPISARLFLAMLERLSHGHLELITPHGTTLTFGDLRQPPSAQLRIL 60
           +NR PALQTTGRRAGPISARLFLAMLERLSHGHLELITPHGTTLTFGDLRQPPSAQLRIL
Sbjct: 1   MNRSPALQTTGRRAGPISARLFLAMLERLSHGHLELITPHGTTLTFGDLRQPPSAQLRIL 60

Query: 61  DWRACGAILRAGDIGFGEAYGNGWVETPDLAALLRLAMRNRAMLASAVEGGRLASLWYRL 120
           DWRACGAILRAGDIGFGEAYG+GWV+TPDLAALLRLAMRNR +L+SAVEGG LAS WYRL
Sbjct: 61  DWRACGAILRAGDIGFGEAYGHGWVDTPDLAALLRLAMRNRQVLSSAVEGGWLASWWYRL 120

Query: 121 RHLLRSNTRSGSRRNIHAHYDLGNDFYRLWLDPTMTYSSAIFTEPCQSLASAQAAKYQRI 180
           RHLLRSNTRSGSRRNIHAHYDLGNDFYRLWLDPTM+YSSAIF+ P QSL  AQAAKYQRI
Sbjct: 121 RHLLRSNTRSGSRRNIHAHYDLGNDFYRLWLDPTMSYSSAIFSAPGQSLEQAQAAKYQRI 180

Query: 181 VDQLGLQAGDRVLEIGCGWGGFAEHAARLGIRVHGVTISPSQLAFGQERMRHQQLDHLAH 240
           VDQLGL+AGDRVLEIGCGWGGFAEHAARLGIRVHGVTISP+QLA+ QERMR QQLDHLAH
Sbjct: 181 VDQLGLRAGDRVLEIGCGWGGFAEHAARLGIRVHGVTISPAQLAYAQERMRTQQLDHLAH 240

Query: 241 LELCDYRDLDGKYDAIVSIEMFEAVGERFWQTYFDTVSARLKAGGRALIQSITIDEAVFE 300
           LELCDYRDLDG+YDAIVSIEMFEAVGERFWQTYFDTV ARLKAGG+ALIQSITI+EAVFE
Sbjct: 241 LELCDYRDLDGQYDAIVSIEMFEAVGERFWQTYFDTVCARLKAGGQALIQSITIEEAVFE 300

Query: 301 RYRDSADFIREFIFPGGMLPSHERFSRCALRAGLTTRDRFHFGRDYAETLRRWNDAFQAQ 360
           RYRDSADFIREFIFPGGMLPSHERFSRCA RAGL TR+RFHFGRDYAETLRRW+D+F AQ
Sbjct: 301 RYRDSADFIREFIFPGGMLPSHERFSRCAQRAGLATRERFHFGRDYAETLRRWHDSFLAQ 360

Query: 361 RETIAAQGFDERFRRLWQLYYVFCEVGFDEGQTDVVQFLLQKE 403
           RETIAAQGFDERFRRLWQLYYVFCEVGFDEGQTDVVQFLL KE
Sbjct: 361 RETIAAQGFDERFRRLWQLYYVFCEVGFDEGQTDVVQFLLHKE 403


>gi|300310016|ref|YP_003774108.1|
           cyclopropane-fatty-acyl-phospholipid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 177/372 (47%), Gaps = 13/372 (3%)

Query: 34  LELITPHGTTLTFGDLRQPPSAQLRILDWRACGAILRAGDIGFGEAYGNGWVETP-DLAA 92
           L L+  +G    FG     P   L++    A  ++L       GEAY  G +E    + +
Sbjct: 28  LRLVLWNGQQYDFGS--GTPEVTLKVPHASAITSLLTPSLANLGEAYVEGKIEVEGKVKS 85

Query: 93  LLRLAMRNRAMLASAVEGGRLASLWYRLRHLLRSNTRSGSRRNIHAHYDLGNDFYRLWLD 152
           ++++A  N     +    GRL  +   + H     TR      I  HYD+ NDFY+L+LD
Sbjct: 86  IIQVA--NSLASNTLKAEGRLGRMVRSVTH-----TRKRDAEAIQYHYDVSNDFYKLFLD 138

Query: 153 PTMTYSSAIFTEPCQSLASAQAAKYQRIVDQLGLQAGDRVLEIGCGWGGFAEHAA-RLGI 211
             M YS A F    + LA+AQ  K   I++++ L+ G  +L+IGCGWG     AA + G 
Sbjct: 139 EHMVYSCAYFENGDEDLATAQIKKIDHILEKIQLRPGQTLLDIGCGWGALVLRAAQKYGA 198

Query: 212 RVHGVTISPSQLAFGQERMRHQQLDHLAHLELCDYRDLDGKYDAIVSIEMFEAVGERFWQ 271
           R  GVT+S +Q A  +ER+    L     + L DYRD+ G +D I S+ MFE VG +   
Sbjct: 199 RCVGVTLSRNQYALARERVEAAGLSDRIEIRLQDYRDVTGSFDRITSVGMFEHVGIKNLP 258

Query: 272 TYFDTVSARLKAGGRALIQSIT-IDEAVFERYRDSADFIREFIFPGGMLPSHERFSRCAL 330
           +YF  +   L  GG A+   IT  D    E    + +FI +++FP G LP      +   
Sbjct: 259 SYFAQIRKLLADGGMAMNHGITSTDIENGESPYGAGEFIDKYVFPAGELPHISTVLKTMQ 318

Query: 331 RAGLTTRDRFHFGRDYAETLRRWNDAFQAQRETIAAQGFDERFRRLWQLYYVFCEVGFDE 390
             GL   D  +  R YA T   W D F+A  E I  +  DE+  R+W++Y      GF+ 
Sbjct: 319 EGGLEAFDVENLRRHYARTCGIWADNFEANTEAI-HRVTDEKHYRIWRVYLAGSAYGFER 377

Query: 391 GQTDVVQFLLQK 402
               + Q +  K
Sbjct: 378 DWISLYQVVCTK 389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,312,583
Number of extensions: 55154
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)