BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0055.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase [Herb...   503   e-144
gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase [Herb...   388   e-109

>gi|300310385|ref|YP_003774477.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  503 bits (1295), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/288 (84%), Positives = 263/288 (91%)

Query: 1   MKPLRIDAHQHFWRYRADDYPWIGKGMELLACDRLPGQLHPVLDAEGLQSSIAVQARVGR 60
           MKP RIDAHQHFW Y+   YPWIG GMELLACDR PGQL P+LDAEGL  SIAVQAR GR
Sbjct: 1   MKPPRIDAHQHFWFYQPQAYPWIGAGMELLACDRTPGQLQPLLDAEGLGQSIAVQARAGR 60

Query: 61  EETGFLLDLARADRRIAGVVGWEDLSSPHLAANVAQWGRDKLVGFRHQIQDEADVMAFVE 120
           EETGFLL+LAR +RRIAGVVGWEDL+SPHLAANV +WGRDKLVGFRHQ+QDEADV   V+
Sbjct: 61  EETGFLLELARGNRRIAGVVGWEDLASPHLAANVERWGRDKLVGFRHQLQDEADVGGCVD 120

Query: 121 APAFNAGIKWLQQQGLVYDVLIHARQMAEVQAFCARHDRHWLVLDHLGKPALVDFGRSEA 180
           APAFNAG+ WLQ+QG+VYDVL++ARQMAEVQAFCARHDRHWLVLDHLGKPAL +FGR + 
Sbjct: 121 APAFNAGVAWLQRQGMVYDVLVYARQMAEVQAFCARHDRHWLVLDHLGKPALTEFGRGDT 180

Query: 181 SFNGWKRQLRALAAMPHVACKLSGLVTEADWLRGLRQKDYDNIALCLDTALEAFGPQRLM 240
           +F GW+RQLRALAA+PHVACKLSGLVTEADW RGLRQKD+DNI+LCLDTALEAFGPQRLM
Sbjct: 181 AFEGWQRQLRALAALPHVACKLSGLVTEADWQRGLRQKDFDNISLCLDTALEAFGPQRLM 240

Query: 241 FGSDWPVCLLAASYATVAGVVREWAATRLSAAEQEQLWGGTAARCYGL 288
           FGSDWPVCLLAASYA VAGVVREWAATRLSAAEQE LWG TAARCYGL
Sbjct: 241 FGSDWPVCLLAASYAKVAGVVREWAATRLSAAEQELLWGATAARCYGL 288


>gi|300313781|ref|YP_003777873.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score =  388 bits (996), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 176/286 (61%), Positives = 228/286 (79%)

Query: 3   PLRIDAHQHFWRYRADDYPWIGKGMELLACDRLPGQLHPVLDAEGLQSSIAVQARVGREE 62
           PLRIDAHQHFWRYR++DYPWIG GM+LLA DRLP Q  P+L+A+GL +SI VQAR GR+E
Sbjct: 12  PLRIDAHQHFWRYRSEDYPWIGAGMDLLAQDRLPYQFQPLLEAQGLHASITVQARQGRDE 71

Query: 63  TGFLLDLARADRRIAGVVGWEDLSSPHLAANVAQWGRDKLVGFRHQIQDEADVMAFVEAP 122
           T FLL++AR D+RIAG++GWEDLS+P LA  + +WGR KL+G RHQ+Q+  D    +   
Sbjct: 72  TAFLLEMARRDKRIAGIIGWEDLSAPDLAEQMERWGRHKLLGLRHQLQEHDDANTLLTPA 131

Query: 123 AFNAGIKWLQQQGLVYDVLIHARQMAEVQAFCARHDRHWLVLDHLGKPALVDFGRSEASF 182
             + G++WLQ++    DVL H R + +++ FCARHD+HW+VL+HLGKPAL +F +  A+F
Sbjct: 132 PLDQGVRWLQERSYTLDVLAHERHLPQLRQFCARHDQHWVVLNHLGKPALKEFRKGRAAF 191

Query: 183 NGWKRQLRALAAMPHVACKLSGLVTEADWLRGLRQKDYDNIALCLDTALEAFGPQRLMFG 242
             W+++LR L AMPHVACK+SGL+TEADWLRGL  +D+++I  CLDTAL+ FGPQRLMFG
Sbjct: 192 ERWRQELRELTAMPHVACKISGLLTEADWLRGLCTRDFEHIVQCLDTALDLFGPQRLMFG 251

Query: 243 SDWPVCLLAASYATVAGVVREWAATRLSAAEQEQLWGGTAARCYGL 288
           SDWPVCLLAASY+ V  VVREW+ATRL  ++Q+ LWG ++AR YGL
Sbjct: 252 SDWPVCLLAASYSRVVTVVREWSATRLCPSDQDALWGESSARIYGL 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,130
Number of extensions: 43636
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)