BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0044.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillu...   426   e-120
gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...   122   2e-29

>gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  426 bits (1094), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/243 (84%), Positives = 223/243 (91%), Gaps = 1/243 (0%)

Query: 1   MPERLCCFAFTADARRLLIGLASRLAFFDLDTGSISPICRIEDDLPTTRLNDGRCDRQGR 60
           MPERLCC+AFTAD ++LLIGL SRLAFF+L TG+I+PICRIEDDLP+TRLNDGRCDRQGR
Sbjct: 51  MPERLCCYAFTADPQQLLIGLESRLAFFNLSTGTIAPICRIEDDLPSTRLNDGRCDRQGR 110

Query: 61  FVFGTLNEDAGRDPIASFYRLNADLSLERLALPGIAISNSICFSLDGKLMYHCDSMAGKI 120
           FVFGTLNEDAGR PIASFYRLN DL+LERL+LP IAISNSICFSLDGKLMYHCDSMAGKI
Sbjct: 111 FVFGTLNEDAGRAPIASFYRLNTDLTLERLSLPSIAISNSICFSLDGKLMYHCDSMAGKI 170

Query: 121 MVCDYDTDSGAVSHQRVFADLAQQPGGPDGSTVDAEGYLWNAQWGGARVVRFAPDGSIDR 180
           MVCDYDT SGAV  QRVFAD+A QPGGPDGST+DAEGYLWNAQWGGARVVR+APDG IDR
Sbjct: 171 MVCDYDTASGAVGGQRVFADVA-QPGGPDGSTIDAEGYLWNAQWGGARVVRYAPDGRIDR 229

Query: 181 IVEVPTAQPSCVAFGGATFDTLFVTTAHEGMSAEQRAQDKLAGGLFSVPHLDVRGLPEVR 240
           +V +PT+QPSCVAFGGA FDTL+VTTAHEGMSAEQRA D  AG LF+V   DVRGLPEVR
Sbjct: 230 VVAIPTSQPSCVAFGGAQFDTLYVTTAHEGMSAEQRAADPQAGALFAVALADVRGLPEVR 289

Query: 241 FAG 243
           FAG
Sbjct: 290 FAG 292


>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score =  122 bits (307), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 17  LLIGLASRLAFFDLDTGSISPICRIEDDLPTTRLNDGRCDRQGRFVFGTLNEDAGRDPIA 76
           L++ + + +   + DTG+++ +     D    R NDGRCD  GRF  GT+ E   RD   
Sbjct: 74  LVVAIRTGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTIYEPRDRDGGT 133

Query: 77  SF-YRLNADLSLERLALPGIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDTDSGAVSHQ 135
            + +  NA     R A   +  SN + FS D +LMYH ++ A +I + DYD  +GA S+ 
Sbjct: 134 LYCFERNA----LRDAHHAVVTSNGLAFSSDQRLMYHANTPAHRINLYDYDLATGATSNC 189

Query: 136 RVFADLAQQP------GGPDGSTVDAEGYLWNAQWGGARVVRFAPDGSIDRIVEVPTAQP 189
           R+              G PDG+ VD++G  W A + G RV+R +P G I + + +P   P
Sbjct: 190 RLLRQFDSDKSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCP 249

Query: 190 SCVAFGGATFDTLFVTTAHEGMSAEQRAQDKLAGGLFSVPHLDVRGLPEVRF 241
           + VAFGG    TL++TT   G S  + AQ   +G + +V  +DV G  E  +
Sbjct: 250 TMVAFGGDDLRTLYITTGRNGRSPAELAQYPESGCVLAV-RVDVPGQLEYSY 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 832,204
Number of extensions: 36795
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)