BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0043.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310376|ref|YP_003774468.1| outer membrane porin [Herbaspir...   192   1e-50

>gi|300310376|ref|YP_003774468.1| outer membrane porin
           [Herbaspirillum seropedicae SmR1]
          Length = 355

 Score =  192 bits (488), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/162 (64%), Positives = 120/162 (74%), Gaps = 13/162 (8%)

Query: 1   LRAIYDVVRDANGNYDDLWKHSKELILGGTYKFDKLKMFVGYENLRAP--NAAAGAPDRA 58
           LR IYDV+RDANG Y D++  SKELILGGTYK DKLKMF+GYENLRAP  N A+G PDR 
Sbjct: 204 LRGIYDVIRDANGRYTDVYDTSKELILGGTYKIDKLKMFLGYENLRAPDANTASGVPDRV 263

Query: 59  NHYWIGANYDVTSQLQLIASWFHVNANNASVNAAGVGNGGGTSNLYMAGINYFLSKRTLL 118
           NHYW+GANYDVT Q QL+ S FHVNANN + +A           L+MAG+NYFLSKRTLL
Sbjct: 264 NHYWLGANYDVTPQFQLVGSVFHVNANNGNGSAN----------LFMAGVNYFLSKRTLL 313

Query: 119 YVDVGTVRNGTGAGHVLE-NGADNGVSGLKQTGGYFGIAHSF 159
           YV  GT+RNG  A + LE + +  G  G  QTGGYFGIAHSF
Sbjct: 314 YVGGGTMRNGNNANYSLEADSSTGGGKGTNQTGGYFGIAHSF 355


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 440,534
Number of extensions: 14187
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)