BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0030.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310364|ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinas...   513   e-147

>gi|300310364|ref|YP_003774456.1| 2-keto-3-deoxygalactonate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  513 bits (1321), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/320 (83%), Positives = 287/320 (89%), Gaps = 2/320 (0%)

Query: 1   MNQALNQDCALIALDWGTSSLRCYRFDRSGQVVERRAHPWGIMNLPAVGHGEDAHAPYRA 60
           MNQ  + DCALIALDWGTSSLRCYR+D SGQVVERRAHPWGIMNLPAV HG+DA APYRA
Sbjct: 1   MNQN-HHDCALIALDWGTSSLRCYRYDGSGQVVERRAHPWGIMNLPAVEHGDDAQAPYRA 59

Query: 61  ALEAACGDWLKAAPAAPLIAAGMVGSKQGWREAAYLNVPLAPALIGSQLTEVDTGLGRPL 120
           ALEAACGDW+ AAP A LIAAGMVGSKQGWREAAYL VPLAP  IG +LTEVDTGLGR L
Sbjct: 60  ALEAACGDWIAAAPEAALIAAGMVGSKQGWREAAYLTVPLAPDGIGRKLTEVDTGLGRSL 119

Query: 121 WIVPGLLEAGALPNVMRGEETQVIGALQTRTERELLIGLPGTHSKWVRVVEGRIEHFDTF 180
           WI+PGLL+  ALPNVMRGEETQVIGALQ + + ELLIGLPGTHSKWVRVVEGRIEHFDTF
Sbjct: 120 WIIPGLLQNSALPNVMRGEETQVIGALQQQRQSELLIGLPGTHSKWVRVVEGRIEHFDTF 179

Query: 181 MTGEVYGALCGHTILGRTMQKPEVADDEAFLRGAGVARTAQGKSGVLSNIFSSRTLGLTG 240
           MTGEVYGALCGHTILGRTM KP+V DD AF+RGA VA+  QG++GVLSNIFSSRTLGLTG
Sbjct: 180 MTGEVYGALCGHTILGRTMHKPDVPDDAAFVRGARVAQGPQGQAGVLSNIFSSRTLGLTG 239

Query: 241 ELAAEAQPDYLSGLLIGHEIAALKNLYPTTPA-IVLIGDPGLCRRYQLALDLYGLGPAAE 299
           ELA EAQPDYLSGLLIGHEIAALK+LYP   A IVLIGD GLCRRY+LAL+LYGLGP +E
Sbjct: 240 ELAPEAQPDYLSGLLIGHEIAALKSLYPAQQAPIVLIGDAGLCRRYRLALELYGLGPVSE 299

Query: 300 AGAATEAGLWILAQHAGLLA 319
           A AATEAGLWILA+HAGL+A
Sbjct: 300 ADAATEAGLWILARHAGLVA 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,054,163
Number of extensions: 46312
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)