BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0029.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310363|ref|YP_003774455.1| 2-dehydro-3-deoxy-6-phosphogala...   390   e-110
gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate aldol...    70   2e-13

>gi|300310363|ref|YP_003774455.1|
           2-dehydro-3-deoxy-6-phosphogalactonate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  390 bits (1003), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/211 (93%), Positives = 202/211 (95%)

Query: 1   MSTHSQRFHDALRSTGMIAILRGVRNEEAEAIGAALYESGFRIIEVPLNSPEPLASISIL 60
           M+T  QRFHDALRSTGMIAILRGVRN EAEAIGAALYESGFRIIEVPLNSPEPL SI+ L
Sbjct: 1   MNTQPQRFHDALRSTGMIAILRGVRNAEAEAIGAALYESGFRIIEVPLNSPEPLLSITAL 60

Query: 61  RKSLPADCIVGAGTVLKPALVQDVKNAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVT 120
           RKSLPADCIVGAGTVLKPA V+ VK+AGGELIVMPHSDGAVIRAARDAGLYSAPGVATVT
Sbjct: 61  RKSLPADCIVGAGTVLKPAQVEQVKDAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVT 120

Query: 121 EAFAALDNGADVLKMFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVFRAAGASG 180
           EAFAALDNGADVLKMFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVF AAGASG
Sbjct: 121 EAFAALDNGADVLKMFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVFHAAGASG 180

Query: 181 FGLGSALYTPGLSADAVRQRAEAFVAAWKAL 211
           FGLGSALYTPGLSA+ VRQRAEAFVAAWKAL
Sbjct: 181 FGLGSALYTPGLSAEQVRQRAEAFVAAWKAL 211


>gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate
           aldolase/-keto-3-deoxy-6-phosphogluconate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 10  DALRSTGMIAILRGVRNEEAEAIGAALYESGFRIIEVPLNSPEPLASISILRKSLPADCI 69
           + +R++ +I ++   + E A  +  AL   G R++E+ L +   L +I  + +S+P D I
Sbjct: 6   EIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLEITLRTEHGLPAIRAIAESVP-DAI 64

Query: 70  VGAGTVLKPALVQDVKNAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVTEAFAALDNG 129
           VG GT+  P      ++AG    V P    A+I AA+ +GL   PGV T +E  AA + G
Sbjct: 65  VGVGTLTSPEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAAREAG 124

Query: 130 ADVLKMFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVFRAA 176
              LK+FPA   G   +    A    D++  P GGIT E    F A 
Sbjct: 125 FRQLKLFPAVPAGGVGMLNGIAGPLADVSFCPTGGITQETAPQFLAC 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 669,933
Number of extensions: 27683
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)