BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0023.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310361|ref|YP_003774453.1| major facilitator superfamily p...   374   e-105
gi|300313979|ref|YP_003778071.1| major facilitator superfamily p...    86   5e-18

>gi|300310361|ref|YP_003774453.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  374 bits (960), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/271 (87%), Positives = 254/271 (93%)

Query: 3   LAAFDVAMSVQAALVEGGRSRPIMSTLHAMFSIGGIAGSALGALPGLSPLAHAALVAVVT 62
           +AAFDVAMSVQAALVEG R+RPIMSTLHAMFSIGGIAG+ALGA+PGLSPLAHAALV VVT
Sbjct: 120 MAAFDVAMSVQAALVEGQRTRPIMSTLHAMFSIGGIAGAALGAVPGLSPLAHAALVGVVT 179

Query: 63  LSVALSIGPFALPDDVHDETASTPGADKSARRMVLVLGVISFLALMCEGGMYDWAAVYMR 122
           L+V+LSIGPFALPD+VHD  A+  GADK ARRMVLVLG I+FLALMCEGGMYDWAAVYMR
Sbjct: 180 LAVSLSIGPFALPDEVHDSAATPHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMR 239

Query: 123 DIAQSPAAWVSYSYAAFSTGMAAGRLTGDRIRARIGGLRTLLWSGVAGAAGIALAAALPT 182
           D+AQSP AWVSYSYAAFSTGMAAGRLTGDRIRARIGGLRTL WSG AGAAGIALAAA P+
Sbjct: 240 DVAQSPMAWVSYSYAAFSTGMAAGRLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPS 299

Query: 183 PLATMAGLLLAGLGIANLMPIFFLAAARVPGMPAAESIAAVARFAYVGMLLGPVCIGGVA 242
           PLAT+ GLLL+GLGIANLMPIFFLAAARVPGM AAESIAAVARFAYVGMLLGPV IGGVA
Sbjct: 300 PLATLGGLLLSGLGIANLMPIFFLAAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVA 359

Query: 243 EHLGLRVSFVGVALVMMVVALFGPRAVKRFI 273
           EHLGLR+SFVGVALVM VVALFG +AV+RFI
Sbjct: 360 EHLGLRLSFVGVALVMTVVALFGGKAVRRFI 390


>gi|300313979|ref|YP_003778071.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 120/253 (47%), Gaps = 23/253 (9%)

Query: 4   AAFDVAMSVQAALVEGGRSRPIMSTLHAMFSIGGIAG----SALGALPGLSPLAHAALVA 59
           + FDVA++   A  E    RPIMS LH  F +G  +G    SA+  L G++PL H  L A
Sbjct: 135 SCFDVAINALGAQAEREAGRPIMSMLHGWFCVGTFSGALVASAVAGL-GVAPLWHFLLAA 193

Query: 60  VVTLSVALSIGPFALPDDVHDETASTPGADKSARRMVL------VLGVISFLALMCEGGM 113
            +  +  L  G  ALPDD        P  D   +   L      VLGVI+F   + EG +
Sbjct: 194 ALL-AWPLYAGCQALPDD-------RPQYDPQRQLFALPHGHLVVLGVIAFCGAIVEGSV 245

Query: 114 YDWAAVYMRDIAQSPAAWVSYSYAAFSTGMAAGRLTGDRIRARIGGLRTLLWSGVAGAAG 173
            DW+ +YM+D   +       +YAAF+  M   R+ GD ++AR    R +    +    G
Sbjct: 246 ADWSGIYMKDHIGASDGATPLAYAAFAGMMLVMRMVGDGLKARYDARRVVSIGTLVATGG 305

Query: 174 IALAAALPTPLATMAGLLLAGLGIANLMPIFFLAAARVPGMPAAESIAAVARFAYVGMLL 233
           +ALA         + G  +AG G+A + P  F AA R      + ++AAVA   Y G L+
Sbjct: 306 MALAVTAQGMTPAILGFAIAGAGVAAVFPFVFSAAGR----HGSTALAAVATLGYSGSLI 361

Query: 234 GPVCIGGVAEHLG 246
           GP   G +A   G
Sbjct: 362 GPPVFGFLAHGWG 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 625,324
Number of extensions: 19716
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)