BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0020.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310358|ref|YP_003774450.1| methionine aminopeptidase [Herb...   277   4e-76
gi|300311492|ref|YP_003775584.1| methionine aminopeptidase [Herb...   161   3e-41

>gi|300310358|ref|YP_003774450.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  277 bits (708), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 139/144 (96%), Gaps = 3/144 (2%)

Query: 1   VKLRNAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVKVQQATPANIGY 60
           VKLRNAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIV+VQ+ATPANIGY
Sbjct: 4   VKLRNAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVQVQKATPANIGY 63

Query: 61  HGFPKTICSSVNDVICHGIPGGQVLKDGDIINIDVAVIKDGWYGDCSRMYFVGSPNATAR 120
           HGFPKTICSSVN+VICHGIPGGQVLKDGDIINIDVAVIKDGWYGDCSRMYFVGSPNATAR
Sbjct: 64  HGFPKTICSSVNEVICHGIPGGQVLKDGDIINIDVAVIKDGWYGDCSRMYFVGSPNATAR 123

Query: 121 KLVNTTYEAMCAGIRVLARARPWA 144
           KLVNTTYEAMCAGIR +   RP A
Sbjct: 124 KLVNTTYEAMCAGIRAV---RPGA 144


>gi|300311492|ref|YP_003775584.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  161 bits (407), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 101/139 (72%), Gaps = 5/139 (3%)

Query: 1   VKLRNAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVKVQQATPANI-- 58
           + ++ A +I   RVAG+LAAEVL  +   VK GVTT E+DR+CH+++  VQ + PA +  
Sbjct: 4   ITIKTAEDIEGMRVAGRLAAEVLDYITPFVKPGVTTGEIDRLCHEYMTNVQGSIPAPLNY 63

Query: 59  ---GYHGFPKTICSSVNDVICHGIPGGQVLKDGDIINIDVAVIKDGWYGDCSRMYFVGSP 115
              GY  +PK IC+S+NDVICHGIPG +V+K+GD++NIDV +IKDG++GD SRM+F+G P
Sbjct: 64  CPPGYTPYPKAICTSLNDVICHGIPGDKVMKNGDVLNIDVTIIKDGYHGDTSRMFFLGEP 123

Query: 116 NATARKLVNTTYEAMCAGI 134
           +  AR+L   TYE M  GI
Sbjct: 124 SILARRLTEITYECMWLGI 142


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.130    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,575
Number of extensions: 21623
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)