BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0017.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310356|ref|YP_003774448.1| 2-deoxyribose-5-phosphate aldol...   672   0.0  

>gi|300310356|ref|YP_003774448.1| 2-deoxyribose-5-phosphate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/344 (95%), Positives = 334/344 (97%), Gaps = 1/344 (0%)

Query: 1   MNMTSKTPSLRRAAQGEADIVREDSAPAGHPRNGVQPYDAAAFEHLRINLSAAEKRVATL 60
           MNMT KTPSLR +AQGEAD+ + DSAP GHPRN VQ YDAAAFEHLRINLSAAEKRVATL
Sbjct: 1   MNMTRKTPSLR-SAQGEADVAQPDSAPTGHPRNSVQAYDAAAFEHLRINLSAAEKRVATL 59

Query: 61  KGRRSVKKDAQAAWLLKAITCIDLTTLSGDDTPQRVRRLCAKAANPVRADLLEALGMQAR 120
           KGRRSVKKDAQAAWLLKAITCIDLTTLSGDDTPQRVRRLCAKAANP+RADLLEALGMQ R
Sbjct: 60  KGRRSVKKDAQAAWLLKAITCIDLTTLSGDDTPQRVRRLCAKAANPLRADLLEALGMQDR 119

Query: 121 GLTTGAVCVYHRFVKTAVEALEGKNIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEI 180
           GLTTGAVCVYHRFVKTAV+ALEGK IPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEI
Sbjct: 120 GLTTGAVCVYHRFVKTAVDALEGKGIPVAAVSTGFPAGLNPHALKLKEIEASVRDGAAEI 179

Query: 181 DIVITREHVLTGNWEALYREMRDFRQACGDAHVKAILATGELKTLRNVAKASMVCMMAGA 240
           DIVITREHVLTGNWEALYREMRDFRQACG+AHVKAILATGELKTLRNVAKASMVCMMAGA
Sbjct: 180 DIVITREHVLTGNWEALYREMRDFRQACGEAHVKAILATGELKTLRNVAKASMVCMMAGA 239

Query: 241 DFIKTSTGKESVNATPLVSLVMLRMIRQYQEMTGIQVGYKPAGGVATAKDVLEYQVLMKE 300
           DFIKTSTGKESVNATPLVSLVMLRMIRQYQEMTGI+VGYKPAGGVATAKDVLEYQVLMKE
Sbjct: 240 DFIKTSTGKESVNATPLVSLVMLRMIRQYQEMTGIKVGYKPAGGVATAKDVLEYQVLMKE 299

Query: 301 ELGDDWLQPDLFRVGASSLLADIERQLEHHVTGRYSAFNRHAIG 344
           ELG DWLQPDLFRVGASSLLADIERQLEHHVTGRYSAFNRHAIG
Sbjct: 300 ELGHDWLQPDLFRVGASSLLADIERQLEHHVTGRYSAFNRHAIG 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,061,957
Number of extensions: 42482
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)