BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0011.p (510 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310350|ref|YP_003774442.1| sugar ABC transporter ATPase [H... 901 0.0 gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 316 3e-87 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 305 4e-84 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 305 6e-84 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 301 8e-83 >gi|300310350|ref|YP_003774442.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/519 (87%), Positives = 473/519 (91%), Gaps = 10/519 (1%) Query: 1 MSTHDTSRPDGAPAQEFLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMI 60 M++ TS APAQEFLRLQGIHKRFAGVHALRG+DLTIHAGEIYHLLGENGCGKST+I Sbjct: 1 MTSQTTSSVSAAPAQEFLRLQGIHKRFAGVHALRGVDLTIHAGEIYHLLGENGCGKSTLI 60 Query: 61 KIIAGAQPPSEGEIFIQGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLV 120 KIIAGAQPPSEGEI+IQG+RVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALS QLV Sbjct: 61 KIIAGAQPPSEGEIYIQGQRVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLV 120 Query: 121 RHQGRLARLFDRGSLNDTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSA 180 HQGRLARLFDR +LN TAARALRAVNLPA A FLDTRVDELPIATRQLIAIARAIATSA Sbjct: 121 HHQGRLARLFDRHALNQTAARALRAVNLPADADFLDTRVDELPIATRQLIAIARAIATSA 180 Query: 181 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV 240 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV Sbjct: 181 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV 240 Query: 241 AQGPIQTFTKAQLCLXAT----------LDAQLQKTRLEVTALTRRAAFEDVSFTLHEGE 290 AQGPIQ FTKAQL T +DAQL K +EV AL R AFEDVSF L +GE Sbjct: 241 AQGPIQQFTKAQLGQLMTGKQLSQERYRVDAQLHKPLMEVRALGRHGAFEDVSFALRQGE 300 Query: 291 ILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISE 350 ILGITGLLDSGRNELALALAGVEPA GQI L+GQ LSLR PGDAITHGIGYVPEDRISE Sbjct: 301 ILGITGLLDSGRNELALALAGVEPARAGQITLEGQPLSLRNPGDAITHGIGYVPEDRISE 360 Query: 351 GLFLDKSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGG 410 GLFLDKSIRDNI+TTILRK+RGKFGALDAAACQRFS DTVRQLQIATPDVDRPVQSLSGG Sbjct: 361 GLFLDKSIRDNIVTTILRKLRGKFGALDAAACQRFSTDTVRQLQIATPDVDRPVQSLSGG 420 Query: 411 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELL 470 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLA++G+GVILISDDLPELL Sbjct: 421 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAQRGLGVILISDDLPELL 480 Query: 471 QNCDNLLLMKRGRIVRRFEVEGLSEGDLSHDLVSEQSHE 509 QNCDNLLLMKRGRIVRR+ VEGL+E +L HDLVSEQS E Sbjct: 481 QNCDNLLLMKRGRIVRRYAVEGLAESELFHDLVSEQSQE 519 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 316 bits (809), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 199/526 (37%), Positives = 286/526 (54%), Gaps = 52/526 (9%) Query: 1 MSTHDTS------RPDGAPAQEFLR------------LQGIHKRFAGVHALRGIDLTIHA 42 MS+H S P APA+ +R L GI KRF GV AL+ + T+ Sbjct: 1 MSSHVMSIPGTALHPPQAPARSAMRAVADDSTAPVLSLSGIGKRFQGVVALQDVGFTVRP 60 Query: 43 GEIYHLLGENGCGKSTMIKIIAGAQPPSEGEIFIQGERVAELTPLASLSLGIETVYQDLS 102 GE+ LLGENG GKST++KI+ G P EG I + G V + ++ GI V+Q+ Sbjct: 61 GEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLGGREVRFASAQDAMRGGITAVHQETV 120 Query: 103 LLPNMSVAENVALSAQLVRHQGRLARLFDRGSLNDTAARALRA---VNLPATAAFLDTRV 159 + +SVAEN+ + Q + R D + D A RAL A V+LP A RV Sbjct: 121 MFEELSVAENIWIGRQPL---CGTPRRIDWRRMEDEA-RALFARLEVDLPVRA-----RV 171 Query: 160 DELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSH 219 +L +A R + IARA++ A++VIMDEPT +L+ E+ L ++I LR G AV+F+SH Sbjct: 172 KDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLRRAGTAVIFISH 231 Query: 220 KLDECFAIGGQAIVFRDGEKVAQGPIQTFTKAQLCL-------------XATLDAQLQKT 266 K DE +A+ + V RDG +A G + T+ QL A+ Sbjct: 232 KFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVGREVGQVFSRAASNTEDQTAP 291 Query: 267 RLEVTALTRRAAFEDVSFTLHEGEILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQR 326 LEV L+ + F+DVSF + GEILG GL+ +GR+E+ AL G+ P G + +DG+ Sbjct: 292 VLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAGRSEVMHALFGLSPEAQGAVWIDGRE 351 Query: 327 LSLRAPGDAITHGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACQRFS 386 + L +P AI HG+ YVPEDR +G L I NI +L + G F +R Sbjct: 352 VKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQNITLPVLPGI-GFF----LRRHRRRE 406 Query: 387 VDTVR----QLQIATPDVDRPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSK 442 +D R QL++ + V LSGGNQQ+V++ +WLA PRVLIL PT G+D+GSK Sbjct: 407 IDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAKWLATQPRVLILDEPTKGIDIGSK 466 Query: 443 DIIYRIIQDLAKQGMGVILISDDLPELLQNCDNLLLMKRGRIVRRF 488 ++R I +L QG+ VIL+S +LPE++ D +++M +GR+ + F Sbjct: 467 AAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVMHQGRVQQVF 512 Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 13/225 (5%) Query: 278 AFEDVSFTLHEGEILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAIT 337 A +DV FT+ GE++ + G +G++ L L G+ G I L G+ + + DA+ Sbjct: 50 ALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLGGREVRFASAQDAMR 109 Query: 338 HGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIAT 397 GI V ++ + +F + S+ +NI + + G +D R D R L A Sbjct: 110 GGITAVHQETV---MFEELSVAENIWIG-RQPLCGTPRRID----WRRMEDEARAL-FAR 160 Query: 398 PDVDRPVQS----LSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLA 453 +VD PV++ LS + V I R L+ +V+I+ PT + +YRII L Sbjct: 161 LEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLR 220 Query: 454 KQGMGVILISDDLPELLQNCDNLLLMKRGRIVRRFEVEGLSEGDL 498 + G VI IS E+ D +++ GR + E+ ++E L Sbjct: 221 RAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQL 265 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 305 bits (782), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 176/477 (36%), Positives = 281/477 (58%), Gaps = 20/477 (4%) Query: 20 LQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMIKIIAGAQPPSEGEIFIQGE 79 L+ + KRF GV AL + AGE++ L+GENG GKST++KI++G G+I + G+ Sbjct: 25 LRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGK 84 Query: 80 RVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLVRHQGRLARLF-DRGSLNDT 138 V P + +LGI ++Q+L+L+ ++S A+N+ + + + G LF D LN Sbjct: 85 PVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMG----LFIDEDELNRQ 140 Query: 139 AARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKEVD 198 AA + L + T V EL +A +Q++ IA+A++ +R++IMDEPT +L E+ Sbjct: 141 AAAIFARMRLDMDPS---TPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIA 197 Query: 199 ALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQTF---TKAQLCL 255 L ++I L+A GV ++++SHK+DE I + V RDG+ +A P+Q T + + Sbjct: 198 ELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMV 257 Query: 256 XATLDAQLQ--------KTRLEVTALTRRAAFEDVSFTLHEGEILGITGLLDSGRNELAL 307 LD + + LEV L R A DVSFTL +GEILG GL+ +GR E+A Sbjct: 258 GRALDGEQRIPPDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGEILGFAGLMGAGRTEVAR 317 Query: 308 ALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISEGLFLDKSIRDNIITTIL 367 A+ G +P G+I++ G + +++P DA+ HGIGY+ EDR GL + ++ NI + + Sbjct: 318 AIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSM 377 Query: 368 RKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGGNQQRVLIGRWLAINPRV 427 + + G +D A + + VRQL I TP V++ + LSGGNQQ+++I +WL + + Sbjct: 378 GRFT-RVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDI 436 Query: 428 LILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELLQNCDNLLLMKRGRI 484 L PT G+DVG+K IY+++ LA+QG +++IS +LPE+L+ +L+M GRI Sbjct: 437 LFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRI 493 Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 7/209 (3%) Query: 278 AFEDVSFTLHEGEILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAIT 337 A ++ F L GE+ + G +G++ L L+GV G I+LDG+ + + P A Sbjct: 37 ALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVEITEPRQAQA 96 Query: 338 HGIGYVPEDRISEGLFLDKSIRDNI-ITTILRKMRGKFGALDAAACQRFSVDTVRQLQIA 396 GIG + ++ L S NI I RK G F +D R + ++++ Sbjct: 97 LGIGIIHQEL---NLMNHLSAAQNIFIGREPRKAMGLF--IDEDELNRQAAAIFARMRLD 151 Query: 397 TPDVDRPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQG 456 D PV L+ QQ V I + L+ + RVLI+ PT ++ ++RII+DL QG Sbjct: 152 M-DPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQG 210 Query: 457 MGVILISDDLPELLQNCDNLLLMKRGRIV 485 +G++ IS + EL Q D + +M+ G+ + Sbjct: 211 VGIVYISHKMDELRQIADRVSVMRDGKYI 239 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 305 bits (781), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 185/489 (37%), Positives = 279/489 (57%), Gaps = 36/489 (7%) Query: 17 FLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMIKIIAGAQPPSEGEIFI 76 L+++GI K F AL + LTI GEI+ L+GENG GKST++K+++G P +GEI + Sbjct: 6 LLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILL 65 Query: 77 QGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLVRHQGRLARLFDRGSLN 136 G VA P AS + GI +YQ+L++ PN+SVA NV + ++L G L D ++ Sbjct: 66 DGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLG----LIDHAAMR 121 Query: 137 DTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKE 196 LR + A+ L R L IA +Q + IARA+ +R+VIMDEPT +L+++E Sbjct: 122 SRTDAVLRQLGAGFGASDLAGR---LSIAEQQQVEIARALVHRSRIVIMDEPTAALSERE 178 Query: 197 VDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQ---GPIQTFTKAQL 253 + L V+ LR G+A++++SH++ E +A+ + V RDG V + I + Q+ Sbjct: 179 TEQLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQM 238 Query: 254 CLXATLDAQLQKTRLE-------VTALTRRA----AFEDVSFTLHEGEILGITGLLDSGR 302 + +L Q R+ T + RA SF + GE+LG GL+ +GR Sbjct: 239 MVGRSLSEFYQHQRIAPADAAQLPTVMQVRALAGGKIRPASFDVRAGEVLGFAGLVGAGR 298 Query: 303 NELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDRISEGLFLDKSIRDNI 362 ELA L G +P GG I+L+G+ + + P A+ GI YVPEDR +GLFL ++ N Sbjct: 299 TELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANA 358 Query: 363 ITTILRK------MRGK-FGALDAAACQRFSVDTVRQLQIATPDVDRPVQSLSGGNQQRV 415 + + +R + G + AA QR +V ++A P+ PV LSGGNQQ+V Sbjct: 359 TMNVASRHTRLGLVRSRSLGGVARAAIQRLNV------KVAHPET--PVGKLSGGNQQKV 410 Query: 416 LIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLPELLQNCDN 475 L+ RWL I P+VLIL PT GVD+ +K IY+++ LA QG+ V++IS +LPE++ CD Sbjct: 411 LLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDR 470 Query: 476 LLLMKRGRI 484 +L+M+ G I Sbjct: 471 VLVMREGMI 479 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 6/208 (2%) Query: 278 AFEDVSFTLHEGEILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAIT 337 A D+ T+ GEI + G +G++ L L+GV G+I+LDG+ ++LR PG + Sbjct: 21 ALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLDGRPVALRDPGASRA 80 Query: 338 HGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIAT 397 GI + ++ + + S+ N+ ++R + G +D AA + + +RQL Sbjct: 81 AGINLIYQEL---AVAPNISVAANVFMG--SELRTRLGLIDHAAMRSRTDAVLRQLGAGF 135 Query: 398 PDVDRPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGM 457 D LS QQ+V I R L R++I+ PT + + ++ +++ L +G+ Sbjct: 136 GASDL-AGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVRRLRDEGL 194 Query: 458 GVILISDDLPELLQNCDNLLLMKRGRIV 485 +I IS + E+ D + +++ G V Sbjct: 195 AIIYISHRMAEVYALADRVTVLRDGSFV 222 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 301 bits (771), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 179/496 (36%), Positives = 280/496 (56%), Gaps = 32/496 (6%) Query: 11 GAPAQEFLRLQGIHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTMIKIIAGAQPPS 70 G A+ L L GIHK FAGV AL + L + GE++ L+G+NG GKST+IK++ G P Sbjct: 6 GTQARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPD 65 Query: 71 EGEIFIQGERVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSAQLVRHQGRLARLF 130 G+I + G +A + L + +LGI TVYQ+++L PN+SVAEN+ + R+ R R+ Sbjct: 66 GGKIELDGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVG----RYPTRFGRI- 120 Query: 131 DRGSLNDTAARALRAVNLPATAAFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTT 190 D S++ + + L+ + + A + P+A +Q++AI+RA++ SA+++I+DEPT+ Sbjct: 121 DWKSVHTQSRQLLQQLQIDIDVA---APLSSYPLAIQQMVAISRALSVSAKVLILDEPTS 177 Query: 191 SLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQTFTK 250 SL + EV L KV+ LR G+A+LFV+H LD+ + I + V R+G + + + ++ Sbjct: 178 SLDEAEVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSR 237 Query: 251 AQL--------------------CLXATLD---AQLQKTRLEVTALTRRAAFEDVSFTLH 287 L L + L A L+ RR L Sbjct: 238 LDLVNKMVGVTAVDHRKVEAGAEALASELSTDAAAAGAVFLQAEGFGRRGVLAPQDLQLR 297 Query: 288 EGEILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAITHGIGYVPEDR 347 GE+ G+ GLL SGR E+A L G + A GQ+ ++G+ + L P DAI GIG+ EDR Sbjct: 298 RGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVPRDAIAAGIGFCSEDR 357 Query: 348 ISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIATPDVDRPVQSL 407 EG L+ S+R+NII L+ +G F L + + D V+ L I T D++ P+ L Sbjct: 358 KKEGAILELSVRENIILA-LQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLL 416 Query: 408 SGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGMGVILISDDLP 467 SGGNQQ+ L+ RWLA +P +LIL PT G+DV +K I + + ++GM ++ IS ++P Sbjct: 417 SGGNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIP 476 Query: 468 ELLQNCDNLLLMKRGR 483 E+L+ D +L+++ R Sbjct: 477 EVLRCSDRMLVLRDRR 492 Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 7/233 (3%) Query: 278 AFEDVSFTLHEGEILGITGLLDSGRNELALALAGVEPAHGGQIVLDGQRLSLRAPGDAIT 337 A DV L GE+ + G +G++ L L GV GG+I LDG+ ++ + +A Sbjct: 27 ALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIELDGRAIAPASTLEAQA 86 Query: 338 HGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACQRFSVDTVRQLQIAT 397 GI V ++ L + S+ +NI + +FG +D + S ++QLQI Sbjct: 87 LGISTVYQE---VNLCPNLSVAENIFVG---RYPTRFGRIDWKSVHTQSRQLLQQLQIDI 140 Query: 398 PDVDRPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAKQGM 457 DV P+ S QQ V I R L+++ +VLIL PT +D ++++++ L +QGM Sbjct: 141 -DVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVLRRLREQGM 199 Query: 458 GVILISDDLPELLQNCDNLLLMKRGRIVRRFEVEGLSEGDLSHDLVSEQSHEH 510 ++ ++ L + + D + +++ G + V LS DL + +V + +H Sbjct: 200 AILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLDLVNKMVGVTAVDH 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,559,919 Number of extensions: 67028 Number of successful extensions: 835 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 567 Number of HSP's successfully gapped: 202 Length of query: 510 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 421 Effective length of database: 1,198,455 Effective search space: 504549555 Effective search space used: 504549555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)