BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5674.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777781.1| LysR family transcription regulator protein ... 504 e-141 ref|YP_001857393.1| LysR family transcriptional regulator [Burkh... 296 3e-78 ref|ZP_02379665.1| transcriptional regulator, LysR family protei... 294 1e-77 ref|ZP_03585973.1| transcriptional regulator, LysR family [Burkh... 293 3e-77 ref|ZP_03570914.1| transcriptional regulator, LysR family [Burkh... 293 3e-77 >ref|YP_003777781.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65873.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 266/305 (87%), Positives = 287/305 (94%) Query: 23 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 82 MQST+LRYFYQVGRTGSLTAAAERL VAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA Sbjct: 1 MQSTSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 60 Query: 83 GEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFREQYPGM 142 GEVLMA+ARRNLLE+EQV+AEV+GLHAVGQ V+TLACSEGFAWDLLPNV A FREQYPG+ Sbjct: 61 GEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFREQYPGL 120 Query: 143 QFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHPLAARKL 202 QFKL+VVGAA+ASQMVIDGEADISVTYSL P EGL +AYRESGP+FALM+RDHPLA+R L Sbjct: 121 QFKLHVVGAARASQMVIDGEADISVTYSLAPAEGLAVAYRESGPVFALMKRDHPLASRTL 180 Query: 203 LSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARSPDTVAL 262 L+L+DLSPYPLALPE G+TVRQLFDIAC MRGLLF+PVFTSHSLGAVYRFT RSPDTVAL Sbjct: 181 LALSDLSPYPLALPEVGTTVRQLFDIACSMRGLLFSPVFTSHSLGAVYRFTTRSPDTVAL 240 Query: 263 GGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVAAIRQIRT 322 GGFLTV ERAEED M LV MAESELHQRT+QVQTMAGRKLPPAVAAF DFL+AA+RQ+R Sbjct: 241 GGFLTVHERAEEDGMILVAMAESELHQRTVQVQTMAGRKLPPAVAAFSDFLIAALRQVRA 300 Query: 323 RHELG 327 R ELG Sbjct: 301 RQELG 305 >ref|YP_001857393.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC70347.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 301 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 157/295 (53%), Positives = 209/295 (70%), Gaps = 1/295 (0%) Query: 23 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 82 M +TALRYF +V R+GSL+ A+ERL VAVSA+SRQI K+EEE G PLFERR RGMVL+ A Sbjct: 1 MDNTALRYFLEVARSGSLSKASERLFVAVSALSRQIGKLEEELGTPLFERRPRGMVLSDA 60 Query: 83 GEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFREQYPGM 142 G +L ARR+LLE E+V+ E++GL G++ + +A SEG A LP V AHF + YP Sbjct: 61 GRLLAEHARRSLLEAERVVGEIRGLAEEGRATIRVASSEGVAPHFLPQVFAHFLKTYPST 120 Query: 143 QFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHPLAARKL 202 F+L+V + A+Q V +G ADI+V +SL P + +++ Y + PI+AL+RR HPLAA + Sbjct: 121 HFQLDVSAPSVATQRVREGTADIAVCFSLAPEKEIDVHYSQRAPIYALVRRGHPLAAHQA 180 Query: 203 LSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARSPDTVAL 262 +SL DL+P+PLA+ QG T+RQLFDI+C + GL+F PVF S+ A+ F R D V L Sbjct: 181 VSLGDLTPWPLAMDNQGVTIRQLFDISCSLEGLIFEPVFVSNYHAALQSFV-RLTDAVTL 239 Query: 263 GGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVAAI 317 G+LTV+ R + D +A +P+ + LHQRTLQVQTMAGR LP V AF+D L AI Sbjct: 240 TGYLTVRSRLDADGLAAIPITNAALHQRTLQVQTMAGRTLPQTVQAFVDVLKRAI 294 >ref|ZP_02379665.1| transcriptional regulator, LysR family protein [Burkholderia ubonensis Bu] Length = 317 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 157/295 (53%), Positives = 212/295 (71%), Gaps = 1/295 (0%) Query: 23 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 82 + ALRYF +V RTGSL+ AA RLHVAVSAVSRQIAK+E E G PLFERR RGM L+ A Sbjct: 5 LHGLALRYFVEVARTGSLSDAAARLHVAVSAVSRQIAKLEGELGAPLFERRPRGMALSEA 64 Query: 83 GEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFREQYPGM 142 GE L+ FA+R+LLE E VM E+ GL A+ S++ +AC+EGFA D LP V+A F+ ++PG+ Sbjct: 65 GERLLGFAQRSLLEAEHVMKEIGGLDALHGSLLKIACTEGFAIDFLPGVLASFKARHPGV 124 Query: 143 QFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHPLAARKL 202 F L VV A A++ DG+AD+++T+SL P +G+ + + E PI+AL+RRDHPLAAR+ Sbjct: 125 DFSLWVVSPADATRRARDGDADLALTFSLAPEKGVRVEHTERAPIYALVRRDHPLAAREA 184 Query: 203 LSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARSPDTVAL 262 +SL D++ +P LPE G+TVRQL DIAC + GLL P TS++ A+YR+ A+ V Sbjct: 185 VSLADVARHPHVLPEAGTTVRQLIDIACALDGLLLEPELTSNNTAAMYRY-AQQTGAVMF 243 Query: 263 GGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVAAI 317 G L+V++R E D VP+ + +L +R++Q+QTMAGR LP +V AF D LV AI Sbjct: 244 AGLLSVRDRCEADGFVAVPLTDPQLGERSIQIQTMAGRDLPASVRAFRDHLVDAI 298 >ref|ZP_03585973.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] gb|EED99680.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD1] Length = 317 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 154/296 (52%), Positives = 213/296 (71%), Gaps = 1/296 (0%) Query: 23 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 82 + ALRYF +V RTGSL+ A+ RLHVAVSA+SRQIAK+E E G PLFERR RGM L+ A Sbjct: 5 LHGLALRYFVEVARTGSLSDASARLHVAVSAISRQIAKLESELGAPLFERRPRGMALSEA 64 Query: 83 GEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFREQYPGM 142 GE L+ FA+R+LLE E VM E+ GL A+ S++ +ACSEGFA D LP +A F+ ++PG+ Sbjct: 65 GERLLGFAQRSLLEAEHVMKEIGGLDALHGSLLKIACSEGFAIDFLPGALAAFKARHPGV 124 Query: 143 QFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHPLAARKL 202 F + VV A A++ V DG+ADI++T+SL P +G+ + + E PIFAL+RRDHPLAAR+ Sbjct: 125 DFSVWVVSPADATRRVRDGDADIALTFSLAPEKGVRVEHTERAPIFALLRRDHPLAAREA 184 Query: 203 LSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARSPDTVAL 262 +SL D++ +P LPE G+TVRQL DIAC + GL+ P TS++ A+YR+ R+ V Sbjct: 185 VSLADVARHPHVLPEAGTTVRQLIDIACALDGLMLEPELTSNNTAAMYRYAQRT-GAVMF 243 Query: 263 GGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVAAIR 318 G L+V++R + D +VP+ +L +R++QVQTMAGR LP +V AF D L+ A++ Sbjct: 244 SGLLSVRDRCDADGFVVVPVTNPQLRERSIQVQTMAGRDLPASVRAFRDHLIDAMK 299 >ref|ZP_03570914.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] ref|ZP_03577591.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gb|EEE07861.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2] gb|EEE14201.1| transcriptional regulator, LysR family [Burkholderia multivorans CGD2M] Length = 315 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 154/296 (52%), Positives = 213/296 (71%), Gaps = 1/296 (0%) Query: 23 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 82 + ALRYF +V RTGSL+ A+ RLHVAVSA+SRQIAK+E E G PLFERR RGM L+ A Sbjct: 5 LHGLALRYFVEVARTGSLSDASARLHVAVSAISRQIAKLESELGAPLFERRPRGMALSEA 64 Query: 83 GEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFREQYPGM 142 GE L+ FA+R+LLE E VM E+ GL A+ S++ +ACSEGFA D LP +A F+ ++PG+ Sbjct: 65 GERLLGFAQRSLLEAEHVMKEIGGLDALHGSLLKIACSEGFAIDFLPGALAAFKARHPGV 124 Query: 143 QFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHPLAARKL 202 F + VV A A++ V DG+ADI++T+SL P +G+ + + E PIFAL+RRDHPLAAR+ Sbjct: 125 DFSVWVVSPADATRRVRDGDADIALTFSLAPEKGVRVEHTERAPIFALLRRDHPLAAREA 184 Query: 203 LSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARSPDTVAL 262 +SL D++ +P LPE G+TVRQL DIAC + GL+ P TS++ A+YR+ R+ V Sbjct: 185 VSLADVARHPHVLPEAGTTVRQLIDIACALDGLMLEPELTSNNTAAMYRYAQRT-GAVMF 243 Query: 263 GGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVAAIR 318 G L+V++R + D +VP+ +L +R++QVQTMAGR LP +V AF D L+ A++ Sbjct: 244 SGLLSVRDRCDADGFVVVPVTNPQLRERSIQVQTMAGRDLPASVRAFRDHLIDAMK 299