BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5668.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777777.1| transcription regulator protein [Herbaspiril...   209   1e-52
ref|YP_002890867.1| transcription regulator with HTH domain [Tha...   147   4e-34
ref|YP_003847790.1| transcriptional regulator, XRE family [Galli...   132   1e-29
ref|YP_004199069.1| XRE family transcriptional regulator [Geobac...   121   3e-26
ref|YP_001232652.1| helix-turn-helix domain-containing protein [...   121   3e-26

>ref|YP_003777777.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65869.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  209 bits (531), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/130 (91%), Positives = 125/130 (96%)

Query: 1   MQLKLIRTRKDYRAALAEAERLWDAPARSEQADQLDVLTLLIAHYERAHFAIDDPDPIDF 60
           MQLKLIRTRKDYRAALAEAERLWDAPARS QADQLDVLTLLIAHYERAHFAIDDPDPIDF
Sbjct: 3   MQLKLIRTRKDYRAALAEAERLWDAPARSAQADQLDVLTLLIAHYERAHFAIDDPDPIDF 62

Query: 61  LLHVMEARGLSRKDLEPYLGPRGRVSDILNRVRPLTLDMIRKLSAGLHLPADLLIKPYPV 120
           LLHVMEARGLSRKDLEPYLG RGRVSDILNRVRPLTLDMIRKLSAGL+LPADLLI+PYPV
Sbjct: 63  LLHVMEARGLSRKDLEPYLGSRGRVSDILNRVRPLTLDMIRKLSAGLNLPADLLIQPYPV 122

Query: 121 KAASSDLLHA 130
           ++  ++LL A
Sbjct: 123 RSDCAELLSA 132


>ref|YP_002890867.1| transcription regulator with HTH domain [Thauera sp. MZ1T]
 gb|ACR02490.1| putative transcription regulator with HTH domain [Thauera sp. MZ1T]
          Length = 126

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/125 (59%), Positives = 102/125 (81%)

Query: 1   MQLKLIRTRKDYRAALAEAERLWDAPARSEQADQLDVLTLLIAHYERAHFAIDDPDPIDF 60
           M+LK IRT  ++  ALAE ERLWD P  S ++D+L+VL +L+  YE A F I+ PDPI+F
Sbjct: 1   MELKPIRTDSEHAEALAEVERLWDVPTGSAESDRLEVLAMLVEAYETARFPIEAPDPIEF 60

Query: 61  LLHVMEARGLSRKDLEPYLGPRGRVSDILNRVRPLTLDMIRKLSAGLHLPADLLIKPYPV 120
           L +VM++RGL+RKDLEPY+GPRGRV+DI+NR RPL++ MIR+LS+GL LPAD+LI+PYP+
Sbjct: 61  LEYVMDSRGLTRKDLEPYIGPRGRVADIMNRARPLSIGMIRRLSSGLGLPADVLIQPYPL 120

Query: 121 KAASS 125
           +  ++
Sbjct: 121 REVAA 125


>ref|YP_003847790.1| transcriptional regulator, XRE family [Gallionella
           capsiferriformans ES-2]
 gb|ADL56026.1| transcriptional regulator, XRE family [Gallionella
           capsiferriformans ES-2]
          Length = 124

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/124 (56%), Positives = 93/124 (75%)

Query: 1   MQLKLIRTRKDYRAALAEAERLWDAPARSEQADQLDVLTLLIAHYERAHFAIDDPDPIDF 60
           M+LK I+   +Y+AAL E E L+D P  + +AD+L+VL +L+  YE  H+ I  PDPIDF
Sbjct: 1   MELKPIKNEIEYKAALNEIEALFDVPDNTPEADRLEVLVMLVEKYEAQHYPIQPPDPIDF 60

Query: 61  LLHVMEARGLSRKDLEPYLGPRGRVSDILNRVRPLTLDMIRKLSAGLHLPADLLIKPYPV 120
           L + ME RGL+RKDLEPY+G RGRV+++LNR RPLTL MIR+LS GL LPAD+LI  Y +
Sbjct: 61  LNYAMETRGLTRKDLEPYIGSRGRVAEVLNRARPLTLAMIRRLSEGLKLPADVLIADYEL 120

Query: 121 KAAS 124
           + A+
Sbjct: 121 RHAA 124


>ref|YP_004199069.1| XRE family transcriptional regulator [Geobacter sp. M18]
 gb|ADW13793.1| transcriptional regulator, XRE family [Geobacter sp. M18]
          Length = 125

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/119 (51%), Positives = 89/119 (74%)

Query: 1   MQLKLIRTRKDYRAALAEAERLWDAPARSEQADQLDVLTLLIAHYERAHFAIDDPDPIDF 60
           M+++ I+   DY+AAL E E L+DA   + + D+L+VLT L+  YE  H+ I  PDPI+ 
Sbjct: 1   MEIRPIKNEADYQAALKEIELLFDAALDTPEGDRLEVLTTLVEAYEEKHYGIPMPDPIEA 60

Query: 61  LLHVMEARGLSRKDLEPYLGPRGRVSDILNRVRPLTLDMIRKLSAGLHLPADLLIKPYP 119
           +L+ ME+RGL+R+DLE Y+G R RVS++LNR RPL+++MIR L  GL +PA++LI+PYP
Sbjct: 61  ILYHMESRGLTRRDLETYIGSRARVSEVLNRKRPLSMEMIRNLHKGLRIPAEVLIQPYP 119


>ref|YP_001232652.1| helix-turn-helix domain-containing protein [Geobacter
           uraniireducens Rf4]
 gb|ABQ28079.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4]
          Length = 125

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/118 (51%), Positives = 88/118 (74%)

Query: 1   MQLKLIRTRKDYRAALAEAERLWDAPARSEQADQLDVLTLLIAHYERAHFAIDDPDPIDF 60
           M++K I+   DY A L E E L+DA   + + D+L+VLT L+  YE  H++I  PDPI+ 
Sbjct: 1   MEIKPIKNEVDYEATLKEIEFLFDAAPDTPEGDRLEVLTTLVEAYEERHYSIPMPDPIEA 60

Query: 61  LLHVMEARGLSRKDLEPYLGPRGRVSDILNRVRPLTLDMIRKLSAGLHLPADLLIKPY 118
           +L+ M++RGL+R+DLEPY+G R RVS++LNR RPLT++MIR L  GL +PA++LI+PY
Sbjct: 61  ILYHMDSRGLTRRDLEPYIGSRARVSEVLNRKRPLTMEMIRNLHKGLGIPAEVLIQPY 118