BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5666.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777776.1| hypothetical protein Hsero_4401 [Herbaspiril...   171   5e-41
ref|YP_003847791.1| hypothetical protein Galf_2021 [Gallionella ...   135   2e-30
ref|NP_889696.1| hypothetical protein BB3160 [Bordetella bronchi...   127   8e-28
ref|NP_885039.1| hypothetical protein BPP2839 [Bordetella parape...   124   3e-27
ref|YP_003711620.1| hypothetical protein XNC1_1350 [Xenorhabdus ...   124   3e-27

>ref|YP_003777776.1| hypothetical protein Hsero_4401 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65868.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score =  171 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 92/97 (94%), Positives = 95/97 (97%)

Query: 1   MRIIALSTLRTFWTAHPAAETPLRAWYALASRVNWKTPADIKAAYRNASFTRNNRVVFNI 60
           MRIIALSTLRTFWTAHPAAET LRAWYALASRVNWKTPADIKAAYRNASFTRNN+VVFNI
Sbjct: 9   MRIIALSTLRTFWTAHPAAETALRAWYALASRVNWKTPADIKAAYRNASFTRNNKVVFNI 68

Query: 61  KGNDYRLVVAVRYDKEVIYIRFVGTHRQYDDIDVETI 97
           KGNDYRLVVAVRYD+E+IYIRFVGTHRQYD IDVETI
Sbjct: 69  KGNDYRLVVAVRYDQELIYIRFVGTHRQYDAIDVETI 105


>ref|YP_003847791.1| hypothetical protein Galf_2021 [Gallionella capsiferriformans
          ES-2]
 gb|ADL56027.1| Protein of unknown function DUF2136 [Gallionella
          capsiferriformans ES-2]
          Length = 97

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/93 (68%), Positives = 79/93 (84%)

Query: 1  MRIIALSTLRTFWTAHPAAETPLRAWYALASRVNWKTPADIKAAYRNASFTRNNRVVFNI 60
          MR+IA+STLR FW  HP AETPLRAW+A ASR  WKTP++IKAA+RNASF  +NRVVFNI
Sbjct: 1  MRVIAISTLRDFWEKHPQAETPLRAWFADASRAGWKTPSEIKAAHRNASFLGSNRVVFNI 60

Query: 61 KGNDYRLVVAVRYDKEVIYIRFVGTHRQYDDID 93
          KGNDYRL+V V Y++ ++Y+RF+GTH +YD ID
Sbjct: 61 KGNDYRLIVVVHYNRGMMYVRFIGTHAEYDAID 93


>ref|NP_889696.1| hypothetical protein BB3160 [Bordetella bronchiseptica RB50]
 emb|CAE33652.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 100

 Score =  127 bits (318), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/97 (62%), Positives = 75/97 (77%)

Query: 1  MRIIALSTLRTFWTAHPAAETPLRAWYALASRVNWKTPADIKAAYRNASFTRNNRVVFNI 60
          MR+IALSTLR FW  HPAAE PL+AW   AS+  W  PADIKA YR+AS  +N RVVFNI
Sbjct: 1  MRVIALSTLRQFWEKHPAAEQPLKAWVDEASKARWAPPADIKAQYRSASVLKNRRVVFNI 60

Query: 61 KGNDYRLVVAVRYDKEVIYIRFVGTHRQYDDIDVETI 97
          KGNDYRL+VAV +   ++Y++FVGTH +YD +D ET+
Sbjct: 61 KGNDYRLIVAVAFKLGIVYVKFVGTHVEYDRVDAETV 97


>ref|NP_885039.1| hypothetical protein BPP2839 [Bordetella parapertussis 12822]
 emb|CAE38131.1| putative membrane protein [Bordetella parapertussis]
          Length = 100

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 74/97 (76%)

Query: 1  MRIIALSTLRTFWTAHPAAETPLRAWYALASRVNWKTPADIKAAYRNASFTRNNRVVFNI 60
          MR+IALSTLR FW  HPAAE PL+AW   ASR  W  PAD+KA YR+AS  +N RVVF I
Sbjct: 1  MRVIALSTLRQFWEKHPAAEQPLKAWVDEASRARWAPPADLKAQYRSASVLKNRRVVFKI 60

Query: 61 KGNDYRLVVAVRYDKEVIYIRFVGTHRQYDDIDVETI 97
          KGNDYRL+VAV +   ++Y++FVGTH +YD +D ET+
Sbjct: 61 KGNDYRLIVAVAFKLGIVYVKFVGTHVEYDRVDAETV 97


>ref|YP_003711620.1| hypothetical protein XNC1_1350 [Xenorhabdus nematophila ATCC
          19061]
 emb|CBJ89415.1| putative membrane protein [Xenorhabdus nematophila ATCC 19061]
          Length = 100

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 76/97 (78%)

Query: 1  MRIIALSTLRTFWTAHPAAETPLRAWYALASRVNWKTPADIKAAYRNASFTRNNRVVFNI 60
          M+II++++L+ FW  +P AE PL+AW+  A + +WKTPA+IKA YRNAS  +NNRVVFNI
Sbjct: 1  MKIISIASLKAFWEKYPEAEQPLKAWFDGAKKASWKTPAEIKAQYRNASILKNNRVVFNI 60

Query: 61 KGNDYRLVVAVRYDKEVIYIRFVGTHRQYDDIDVETI 97
          KGNDYRL+V++ Y     Y++F+GTHRQYD ID  TI
Sbjct: 61 KGNDYRLIVSIFYPAGWGYVKFIGTHRQYDAIDANTI 97