BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5661.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777772.1| two component response regulator protein [He... 394 e-108 ref|YP_004753958.1| two-component system response regulator QseB... 303 2e-80 ref|YP_003166441.1| winged helix family two component transcript... 288 5e-76 ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia ... 273 1e-71 ref|YP_001578872.1| two component transcriptional regulator [Bur... 273 2e-71 >ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 394 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 213/218 (97%), Positives = 215/218 (98%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLLVEDDPMVGEAVRKGLRQDGF IDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLRTLRERG+AIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GRAESLVQVREV+LNPATHEVTV GKPVNLSAREF LLQAFMDRPGVVLSRAQLEEKLYG Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA 218 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA Sbjct: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVPA 218 >ref|YP_004753958.1| two-component system response regulator QseB [Collimonas fungivorans Ter331] gb|AEK63135.1| Two-component system response regulator QseB [Collimonas fungivorans Ter331] Length = 218 Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 165/216 (76%), Positives = 195/216 (90%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD MVGEAVRKGLRQDGF +DWVQDG +A AL EDY +LLLDLGLP+K+GL Sbjct: 1 MRLLLVEDDLMVGEAVRKGLRQDGFAVDWVQDGAAALSALAQEDYQLLLLDLGLPKKNGL 60 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL++LR G+ IPVLI TARDA++DRVAGLD GADDYL+KPFDLEEL+AR+RAL RRQ+ Sbjct: 61 EVLKSLRAGGNRIPVLIMTARDAISDRVAGLDGGADDYLVKPFDLEELAARIRALLRRQS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GRAE L+++ ++ LNPATHEV + G+ VNLSAREFALL+AF+DRPGVVLSRAQLEEK+YG Sbjct: 121 GRAEPLIELGQLTLNPATHEVLLEGRQVNLSAREFALLRAFLDRPGVVLSRAQLEEKMYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 WDDSIESNAVEV+IHALRKK+GS+FIKNVRG+GY+V Sbjct: 181 WDDSIESNAVEVYIHALRKKLGSNFIKNVRGIGYMV 216 >ref|YP_003166441.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34512.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 220 Score = 288 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 147/217 (67%), Positives = 185/217 (85%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLLVEDDPM+G++V++GLRQDG T DW++DG+ A++AL T Y +LLLDLGLP + GL Sbjct: 1 MRVLLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLPGRSGL 60 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL LR ++IPVL+ TARDA+ADR+ GLDAGADDYL+KPFDL+ELSARMRA+ RR A Sbjct: 61 DVLTRLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRRHA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GRAE +++ + +NPATHE+T+ G PV LSAREFALLQA +++PGV LSRA+LEEKLYG Sbjct: 121 GRAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEKLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVP 217 W D IESNAVEV+IH+LR+K+G++ IKN+RGVGYLVP Sbjct: 181 WGDEIESNAVEVYIHSLRRKLGAEQIKNIRGVGYLVP 217 >ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia dolosa AUO158] gb|EAY68024.1| DNA-binding response regulator [Burkholderia dolosa AUO158] Length = 251 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 151/216 (69%), Positives = 182/216 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK LR DGF +DWVQDG++A AL E Y +LLLDLGLP++DG+ Sbjct: 32 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGEAALTALGGEAYDLLLLDLGLPKRDGI 91 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRTLR RG A+PVLI TARDAVADRV GLDAGADDYL+KPFDL+EL ARMRAL RRQA Sbjct: 92 DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 151 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GR+ESL++ + L+PA+H+VT+ G PV LSAREFALL+A + RPG VLS++QLEEK+YG Sbjct: 152 GRSESLIRHGTLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 211 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+GSD I+NVRG+GY+V Sbjct: 212 WGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMV 247 >ref|YP_001578872.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gb|ABX14375.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 225 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 150/216 (69%), Positives = 182/216 (84%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVEDD M+ E VRK LR DGF +DWVQDG+SA AL E Y +LLLDLGLP++DG+ Sbjct: 6 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGESALTALGGESYDLLLLDLGLPKRDGI 65 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLRTLR RG ++PVLI TARDA+ADRV GLDAGADDYL+KPFDL+EL ARMRAL RRQA Sbjct: 66 DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 125 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GR+ESL++ + L+PA+H+VT+ G PV LSAREFALL+A + RPG VLS++QLEEK+YG Sbjct: 126 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W + I SN VEV+IHALRKK+GSD I+NVRG+GY+V Sbjct: 186 WGEEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMV 221