BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5660.p (459 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777771.1| transmembrane sensor histidine kinase [Herba... 518 e-144 ref|YP_004753959.1| sensory histidine kinase QseC [Collimonas fu... 347 4e-93 ref|YP_002008921.1| sensory histidine kinase in two-component re... 275 1e-71 ref|ZP_08272866.1| Sensory histidine kinase QseC [Oxalobacterace... 273 4e-71 ref|YP_299514.1| sensor histidine kinase [Ralstonia eutropha JMP... 272 7e-71 >ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65863.1| transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 444 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 300/312 (96%), Positives = 305/312 (97%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M S+RNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP Sbjct: 1 MNSVRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 Query: 61 GQQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSAQIGST 120 GQQFPELEDEIMMQIWDSRG+VIYHSHARGAMPRQAELGFANV GPNGMWRVYSAQIGST Sbjct: 61 GQQFPELEDEIMMQIWDSRGAVIYHSHARGAMPRQAELGFANVSGPNGMWRVYSAQIGST 120 Query: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM Sbjct: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 Query: 181 NSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQAQL 240 NSLQPL+DVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQ QL Sbjct: 181 NSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQTQL 240 Query: 241 AERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAMNFAEVDLRALLGSVVGDL 300 AERA DE ERRAAFADLKNGLER THLVHQLLTLARQEPDAM+F +VDLRALLGSVVGDL Sbjct: 241 AERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQEPDAMSFTQVDLRALLGSVVGDL 300 Query: 301 SSVAEHGGIDLG 312 SSVAEHGGIDLG Sbjct: 301 SSVAEHGGIDLG 312 >ref|YP_004753959.1| sensory histidine kinase QseC [Collimonas fungivorans Ter331] gb|AEK63136.1| Sensory histidine kinase QseC [Collimonas fungivorans Ter331] Length = 437 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 212/296 (71%), Positives = 248/296 (83%), Gaps = 3/296 (1%) Query: 20 IVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP-GQQFPELEDEIMMQIWDS 78 I++AG+ALYFQARGEAN++FDYQMRQI ASLPRQAFSP++ G PEL+D+IM+QIWD+ Sbjct: 23 ILVAGIALYFQARGEANELFDYQMRQIVASLPRQAFSPMTENGDGGPELDDQIMIQIWDN 82 Query: 79 RGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSAQIGSTVVQVAQPQSARDEIAAQM 138 G VIYHSH + ++P QAELGF NVR NG+WRVYSAQIG+TVVQ+AQPQSAR++IAAQM Sbjct: 83 TGVVIYHSHGQASLPPQAELGFTNVRQSNGLWRVYSAQIGNTVVQIAQPQSARNQIAAQM 142 Query: 139 AVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDMNSLQPLSDVGMPQEIQPL 198 AVKTV PLLLLFPL+G+L WVAVSRGLAP+R+AA EV ARDM++L P+ D +P EIQPL Sbjct: 143 AVKTVTPLLLLFPLLGLLIWVAVSRGLAPIRRAAMEVQARDMHALSPIPDATLPGEIQPL 202 Query: 199 THALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQAQLAERATDEVERRAAFADLK 258 T ALNDLLARL + + QRAFVADAAHELRTPLTALRLQ QLAERA E ER+AAF DLK Sbjct: 203 TQALNDLLARLGQSIKAQRAFVADAAHELRTPLTALRLQVQLAERAAGEGERQAAFGDLK 262 Query: 259 NGLERATHLVHQLLTLARQEPDAMN--FAEVDLRALLGSVVGDLSSVAEHGGIDLG 312 GLERATHL+ QLLTLARQEP A + AE+DLRALL SV+GD + A +DLG Sbjct: 263 QGLERATHLLQQLLTLARQEPGAFDQAHAELDLRALLHSVIGDFALTAHERQVDLG 318 >ref|YP_002008921.1| sensory histidine kinase in two-component regulatory system; signal peptide [Cupriavidus taiwanensis LMG 19424] emb|CAQ72869.1| Putative sensory histidine kinase in two-component regulatory system; signal peptide [Cupriavidus taiwanensis LMG 19424] Length = 441 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 199/411 (48%), Positives = 246/411 (59%), Gaps = 15/411 (3%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M+SI+ LL WL GL + I +A +Y QAR EAN +FDYQM+Q+AA+LP Q +P++P Sbjct: 1 MRSIQRTLLAWLAAGLVAGIAIATALIYGQARQEANALFDYQMKQMAAALPSQFPNPVAP 60 Query: 61 G-----QQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSA 115 ++++++ IWD G +Y SHA A+P +AELGF+N+ G WR+YS Sbjct: 61 PFVGAPGDLAHADEDVVIHIWDGSGRSLYLSHAHPALPARAELGFSNLTTQQGEWRLYSM 120 Query: 116 QIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEV 175 Q+G VVQ+AQP SAR +AA+MA++TV PLLLL PL+G L W+AV RGL P+R+ A EV Sbjct: 121 QLGPAVVQIAQPMSARRTLAARMALRTVAPLLLLLPLLGWLVWMAVGRGLRPLREIATEV 180 Query: 176 AARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALR 235 ARD N+L PL+ MP EI PL+ ALN LLARL HA +TQRAFVADAAH LRTPLTAL+ Sbjct: 181 RARDANTLAPLAVRPMPDEIAPLSAALNQLLARLSHAIDTQRAFVADAAHALRTPLTALQ 240 Query: 236 LQAQLAERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAM--NFAEVDLRALL 293 LQAQL ERA D R A A L+ GLER THLV QLLTLARQEP A V+L L Sbjct: 241 LQAQLVERADDGAARDEAIAKLRQGLERLTHLVTQLLTLARQEPGAAVPPHEPVELHQLA 300 Query: 294 GSVVGDLSSVAEHGGIDLGSVGPGRRRPPGARAGQCRCLAHPLQQPGGQRPALYPGGRRG 353 +VV D++ A IDLG G P R G L L A P G R Sbjct: 301 AAVVADMAQAALDRDIDLGLDGSANAAPAVVR-GDADALRILLTNLVDNALAYIPAGGRI 359 Query: 354 RCRFRIPRWGR-----VRGSDPGQWPRHRRERVAARLRSLLPGPARAGTGL 399 R GR V + PG P R RV R + P G+GL Sbjct: 360 DVAVRRGSDGRSVELVVSDNGPG-IPAEERARVFDRFYRVADAPT-GGSGL 408 >ref|ZP_08272866.1| Sensory histidine kinase QseC [Oxalobacteraceae bacterium IMCC9480] gb|EGF33660.1| Sensory histidine kinase QseC [Oxalobacteraceae bacterium IMCC9480] Length = 448 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 173/313 (55%), Positives = 215/313 (68%), Gaps = 3/313 (0%) Query: 3 SIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISPGQ 62 SIR LL+WL GL +I L + L+ QAR EAN +FD+QM+Q+A++LP + S PG Sbjct: 7 SIRRTLLVWLAAGLAVVISLMALLLFRQARDEANHLFDFQMQQVASALPSRFLSLPEPGT 66 Query: 63 -QFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRVYSAQIGSTV 121 + +++QIWD G +Y SH +P+ A LGFANV WRVYSAQ G+TV Sbjct: 67 GAVFDAAPAVVIQIWDPTGVRLYFSHDVADLPQLAVLGFANVALRGETWRVYSAQQGATV 126 Query: 122 VQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDMN 181 VQ+AQP AR ++AA+ A+KT+ PLLLL P +G L W+AVSRGLAPV AA++AARD Sbjct: 127 VQIAQPLRARSDMAARSALKTIAPLLLLVPFLGGLIWLAVSRGLAPVLGVAAQLAARDAG 186 Query: 182 SLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQAQLA 241 L P+SD +P EI PLT A+NDLLARL HA TQR FV DAAHELRTPLTAL+LQ LA Sbjct: 187 QLAPVSDAALPDEILPLTDAVNDLLARLAHAAATQRIFVGDAAHELRTPLTALKLQVDLA 246 Query: 242 ERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAM--NFAEVDLRALLGSVVGD 299 +RATD R AAF L+ GL+RA+ LVHQLLTLARQEP+AM + VDL + + V + Sbjct: 247 QRATDPASREAAFGALRAGLDRASRLVHQLLTLARQEPEAMQRDMVAVDLAEVARAAVAE 306 Query: 300 LSSVAEHGGIDLG 312 LS A GIDLG Sbjct: 307 LSMRASQRGIDLG 319 >ref|YP_299514.1| sensor histidine kinase [Ralstonia eutropha JMP134] gb|AAZ64670.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 444 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 175/322 (54%), Positives = 221/322 (68%), Gaps = 10/322 (3%) Query: 1 MKSIRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISP 60 M+SI+ LL WL GL + I +A V +Y QAR EAN +FDYQM+Q+AA+LP Q P++P Sbjct: 1 MRSIQRTLLWWLAAGLMAGIAIATVLIYGQARQEANALFDYQMKQVAAALPSQFADPVAP 60 Query: 61 --------GQQFPELEDEIMMQIWDSRGSVIYHSHARGAMPRQAELGFANVRGPNGMWRV 112 G ++++++ IWD G +Y SHA A+P +AELGF+NV G WR+ Sbjct: 61 PFLMEGGPGADLLHADEDVVIHIWDGSGRSLYLSHAHPALPARAELGFSNVTTGEGEWRL 120 Query: 113 YSAQIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAA 172 YS Q+G VVQ+AQP SAR +AA+MA++TV PLLLL PL+ L W+AV RGL P+R+ A Sbjct: 121 YSMQLGPAVVQIAQPMSARRTLAARMALRTVAPLLLLLPLLAWLVWMAVGRGLRPLREIA 180 Query: 173 AEVAARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLT 232 EV ARD N+L PL+ MP EI PL+ ALN LL RL HA +TQRAFVADAAH LRTPLT Sbjct: 181 TEVRARDANALTPLAVRPMPDEIAPLSDALNQLLGRLSHAIDTQRAFVADAAHALRTPLT 240 Query: 233 ALRLQAQLAERATDEVERRAAFADLKNGLERATHLVHQLLTLARQEPDAMNFAE--VDLR 290 AL+LQAQL ERA D RR A ++L+ GLER THLV QLLTLARQEP A+ + VDL Sbjct: 241 ALQLQAQLVERAEDPQARRQAVSNLRQGLERLTHLVAQLLTLARQEPGAVTLPQEPVDLH 300 Query: 291 ALLGSVVGDLSSVAEHGGIDLG 312 + +VV D++ A IDLG Sbjct: 301 EVASTVVADMAQAALDREIDLG 322