BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5653.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777764.1| hypothetical protein Hsero_4389 [Herbaspiril...   207   4e-52
ref|YP_001355262.1| hypothetical protein mma_3572 [Janthinobacte...    75   4e-12
ref|YP_001101573.1| hypothetical protein HEAR3349 [Herminiimonas...    54   8e-06

>ref|YP_003777764.1| hypothetical protein Hsero_4389 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65856.1| hypothetical protein Hsero_4389 [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  207 bits (527), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 117/131 (89%), Positives = 123/131 (93%), Gaps = 2/131 (1%)

Query: 2   SDQDQGMTHEERKRKILAQGALYRLGVMEAREVVRENLSAESLAKGALSRVGHFAASLFG 61
           +DQD GMTHEERKRK+LAQGALYRLGVMEAREVVRENLSAESLAKGALSRVGHFA SLFG
Sbjct: 4   TDQDHGMTHEERKRKVLAQGALYRLGVMEAREVVRENLSAESLAKGALSRVGHFAVSLFG 63

Query: 62  GGRTVQSIKSLKSLSGGLGNLNLQTVTPLLMTGASLLSRRWLRKPLMMGGVIAAVGGLAY 121
           GGRTVQSIKSL   +GGLGNLNLQTVTPLLMTGASLLSRRWLRKPLM+GGV+A VGGLAY
Sbjct: 64  GGRTVQSIKSLT--AGGLGNLNLQTVTPLLMTGASLLSRRWLRKPLMLGGVVAMVGGLAY 121

Query: 122 YFSQRGNAPEE 132
           YFSQRG A E+
Sbjct: 122 YFSQRGAAAEQ 132


>ref|YP_001355262.1| hypothetical protein mma_3572 [Janthinobacterium sp. Marseille]
 gb|ABR91325.1| Hypothetical protein mma_3572 [Janthinobacterium sp. Marseille]
          Length = 134

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 4   QDQGMTHEERKRKILAQGALYRLGVMEAREVVRENLSAESLAKGALSRVGHFAASLFGGG 63
           Q+   +  +RK+++L Q   YR+ + EAR+VVRENL A+++AK A+  V   A S F   
Sbjct: 6   QEPEESSAQRKQRLLEQCKAYRVAIGEARDVVRENLGADAIAKTAIGLVSVRAQSAFA-- 63

Query: 64  RTVQSIKSLKSLSGGLGNLNLQTVTPLLMTGASLLSRRWLRKPLMMGGVIAAVGGLAYYF 123
            +V  +  LKSL+G      L+ + PL+++G SLLS+R + +P++ G ++    G A YF
Sbjct: 64  -SVSDLFDLKSLTGE----KLRRLLPLVVSGVSLLSKRSVLRPILRGALVVGSAGTALYF 118

Query: 124 SQRGNAPEEVDMKEN 138
             +    + V + E+
Sbjct: 119 LSKKKKAKHVALHEH 133


>ref|YP_001101573.1| hypothetical protein HEAR3349 [Herminiimonas arsenicoxydans]
 emb|CAL63452.1| Hypothetical protein HEAR3349 [Herminiimonas arsenicoxydans]
          Length = 139

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 11/130 (8%)

Query: 4   QDQGMTHEE----RKRKILAQGALYRLGVMEAREVVRENLSAESLAKGALSRVGHFAASL 59
           QD+ +  EE    RK ++L Q   YR G+  AR  VR +L A+ +AK A+  +   A S 
Sbjct: 3   QDRKLQEEETLAQRKERLLLQCRAYRSGIGRARNTVRAHLGADEIAKTAIGLISARAQSA 62

Query: 60  FGGGRTVQSIKSLKSLSGGLGNLNLQTVTPLLMTGASLLSRRWLRKPLMMGGVIAAVGGL 119
                    +   +++SG      LQ + PL+++G SLLSRR L +P++ G  +A     
Sbjct: 63  LA---NFSDLLDFRNMSGA----KLQRLLPLVVSGVSLLSRRSLWRPILKGAAVAGTAVA 115

Query: 120 AYYFSQRGNA 129
             YF  R  A
Sbjct: 116 TIYFLSRKKA 125