BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5652.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedi... 285 6e-75 ref|YP_001099368.1| putative outer membrane protein; putative pe... 231 6e-59 ref|YP_004039965.1| ompa/motb domain-containing protein [Methylo... 222 4e-56 ref|YP_003051282.1| OmpA/MotB domain-containing protein [Methylo... 221 7e-56 ref|YP_001352854.1| OmpA family protein [Janthinobacterium sp. M... 221 1e-55 >ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65855.1| OmpA family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 285 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 215/233 (92%), Positives = 224/233 (96%), Gaps = 1/233 (0%) Query: 1 MKKISIAAIAGVLALSGCADMSQTQRGTATGAGIGAGIGGIIGAATGGGGGGRALGGAAI 60 MKK+SIAAIAGVLALSGCADMS TQRGTATGAGIGAG+GGIIGAATGGGGGGRALGGAAI Sbjct: 1 MKKLSIAAIAGVLALSGCADMSPTQRGTATGAGIGAGLGGIIGAATGGGGGGRALGGAAI 60 Query: 61 GGAIGAVAGNIWSNRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIK 120 GGAIGAVAGNIWSNRMENQKRAME+ATQGTGVQV+QTADNRLKLEIPSDISFDTGRADIK Sbjct: 61 GGAIGAVAGNIWSNRMENQKRAMEEATQGTGVQVSQTADNRLKLEIPSDISFDTGRADIK 120 Query: 121 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAAN 180 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLS QRA+RTRDYL++RGVAAN Sbjct: 121 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRTRDYLSSRGVAAN 180 Query: 181 RFNISGRGSHEPLVPNTSDANRAKNRRVEIFVAEQQAAAPAQQPPGGYAPGGY 233 RF+I GRGSHEPLV NTSDANRA+NRRVEIFVAEQQAAA QQ P GYAPG Y Sbjct: 181 RFSIQGRGSHEPLVANTSDANRARNRRVEIFVAEQQAAA-PQQAPAGYAPGNY 232 >ref|YP_001099368.1| putative outer membrane protein; putative peptidoglycan-associated (lipo)-protein [Herminiimonas arsenicoxydans] emb|CAL61241.1| conserved hypothetical protein; putative OmpA domain [Herminiimonas arsenicoxydans] Length = 225 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 145/214 (67%), Positives = 173/214 (80%), Gaps = 2/214 (0%) Query: 1 MKKISIAAIAGVLALSGCADMSQTQRGTATGAGIGAGIGGIIGAATGGGGGGRALGGAAI 60 M+ + I ++A +LALSGCA+MS T+RGTA GAGIGAG+G GGG GGAA+ Sbjct: 1 MRTLMIGSLAAILALSGCANMSPTERGTAQGAGIGAGLGA--LIGGVGGGSKNIAGGAAV 58 Query: 61 GGAIGAVAGNIWSNRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIK 120 GG +GAVAGN+WS+RMENQKRAMEQATQGTGVQVTQT+DNRLKL+IPSDISF TGR+DI Sbjct: 59 GGILGAVAGNVWSSRMENQKRAMEQATQGTGVQVTQTSDNRLKLDIPSDISFATGRSDIN 118 Query: 121 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAAN 180 RP+LDRFA LV+NPA TVTI+GHTD+TGSDAIN+PLS RA+RTRDYL RGVA Sbjct: 119 SSFRPILDRFATGLVDNPAATVTIIGHTDSTGSDAINNPLSFDRASRTRDYLAGRGVAPQ 178 Query: 181 RFNISGRGSHEPLVPNTSDANRAKNRRVEIFVAE 214 R ++ GRGS EP+ N ++A RA+NRRVEI+VAE Sbjct: 179 RIHVDGRGSREPVASNANEAGRARNRRVEIYVAE 212 >ref|YP_004039965.1| ompa/motb domain-containing protein [Methylovorus sp. MP688] gb|ADQ84729.1| OmpA/MotB domain protein [Methylovorus sp. MP688] Length = 222 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 116/154 (75%), Positives = 129/154 (83%) Query: 70 NIWSNRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDR 129 N+WS RME QK+ MEQAT GTGVQV+QTADNRLKL+IPSDISFD+G++DIKP RPVLD Sbjct: 69 NVWSRRMEEQKQQMEQATAGTGVQVSQTADNRLKLDIPSDISFDSGKSDIKPNFRPVLDS 128 Query: 130 FAATLVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAANRFNISGRGS 189 FA +LV NPAT VTIVGHTDNTG+DA+N+PLS RA RDYL TRGVA++RF GRGS Sbjct: 129 FAQSLVANPATKVTIVGHTDNTGTDAVNNPLSLNRANHARDYLVTRGVASSRFTTEGRGS 188 Query: 190 HEPLVPNTSDANRAKNRRVEIFVAEQQAAAPAQQ 223 HEPLV N SDANRAKNRRVEIFVAE QAAA Q Sbjct: 189 HEPLVENNSDANRAKNRRVEIFVAEPQAAATTPQ 222 >ref|YP_003051282.1| OmpA/MotB domain-containing protein [Methylovorus glucosetrophus SIP3-4] gb|ACT50755.1| OmpA/MotB domain protein [Methylovorus glucosetrophus SIP3-4] Length = 222 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 116/154 (75%), Positives = 129/154 (83%) Query: 70 NIWSNRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIKPEMRPVLDR 129 N+WS RME QK+ MEQAT GTGVQV+QTADNRLKL+IPSDISFD+G++DIKP RPVLD Sbjct: 69 NVWSRRMEEQKQQMEQATAGTGVQVSQTADNRLKLDIPSDISFDSGKSDIKPNFRPVLDS 128 Query: 130 FAATLVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAANRFNISGRGS 189 FA +LV NPAT VTIVGHTDNTG+DA+N+PLS RA RDYL TRGVA++RF GRGS Sbjct: 129 FAQSLVANPATRVTIVGHTDNTGTDAVNNPLSLNRANHARDYLVTRGVASSRFTTEGRGS 188 Query: 190 HEPLVPNTSDANRAKNRRVEIFVAEQQAAAPAQQ 223 HEPLV N SDANRAKNRRVEIFVAE QAAA Q Sbjct: 189 HEPLVENNSDANRAKNRRVEIFVAEPQAAAATPQ 222 >ref|YP_001352854.1| OmpA family protein [Janthinobacterium sp. Marseille] gb|ABR90219.1| OmpA family protein [Janthinobacterium sp. Marseille] Length = 229 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 141/214 (65%), Positives = 168/214 (78%), Gaps = 2/214 (0%) Query: 1 MKKISIAAIAGVLALSGCADMSQTQRGTATGAGIGAGIGGIIGAATGGGGGGRALGGAAI 60 M+ + I ++A VLALSGCA+MS+T+RGTA GAGIGAG+G ++G TGG Sbjct: 1 MRTLMIGSLAAVLALSGCANMSETERGTAQGAGIGAGVGALLGGITGGSRNIAGGAAIGG 60 Query: 61 GGAIGAVAGNIWSNRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIK 120 AVAGN+WS++MENQKRAMEQATQGTGVQV+QT+DNRLKLEIPSDISF TGR+DI Sbjct: 61 VIG--AVAGNVWSSKMENQKRAMEQATQGTGVQVSQTSDNRLKLEIPSDISFATGRSDIN 118 Query: 121 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSQQRAARTRDYLTTRGVAAN 180 P ++P+LDRFA LV+NP TVTI+GHTD+TGSDAIN+PLS RA+RTRDYLT RGVA Sbjct: 119 PSLQPILDRFATGLVDNPTATVTIIGHTDSTGSDAINNPLSFDRASRTRDYLTGRGVAPQ 178 Query: 181 RFNISGRGSHEPLVPNTSDANRAKNRRVEIFVAE 214 R + GRGSHEP+ N A RA+NRRVEIFVAE Sbjct: 179 RIYVDGRGSHEPIASNADAAGRARNRRVEIFVAE 212