BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5615.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [Herbaspirillum ... 530 e-148 ref|YP_003023183.1| CDP-glucose 4,6-dehydratase [Geobacter sp. M... 404 e-110 ref|YP_002137675.2| CDP-glucose 4,6-dehydratase [Geobacter bemid... 403 e-110 ref|NP_992204.1| putative CDP-D-glucose-4,6-dehydratase [Yersini... 402 e-110 gb|AAN23037.1|AF461768_3 CDP-glucose-4,6-dehydratase [Yersinia p... 402 e-110 >ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [Herbaspirillum seropedicae SmR1] gb|ACO81755.1| RfbG [Herbaspirillum seropedicae SmR1] gb|ADJ65875.1| CDP-glucose-4,6-dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 357 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 256/358 (71%), Positives = 299/358 (83%), Gaps = 1/358 (0%) Query: 2 MSNFWRDKRVFITGHTGFKGGWLSLWLHMMGAKVSGYSLPAPTHPSLFELARLHDCVQTT 61 M+NFWRDKRVFITGHTGFKG WL+LWLH+MGAKVSGYSLPAPT PSLF LARLH+CVQTT Sbjct: 1 MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT 60 Query: 62 TGDVRDPVHLAQTMAAVQPDVVFHLAAQALVRDSYANPVDNYATNVMGTVHVLEAVRHTP 121 TGDVRDP HLA+TMAAVQPDVVFHLA Q + SY P+D +ATNVMGT H+LEAVR TP Sbjct: 61 TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP 120 Query: 122 SVRSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGIAELVTSAYRRSFFGERDAG 181 SVR+VVVV+S+KCYENREWLWGYREDDPMGGHDP+SSSKG AELVT+AYRRSFF Sbjct: 121 SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS 180 Query: 182 RAAIASVRAGNVIGGGDFAADRLLPDVIRALQAQTPLNIRHPGAIRPWQFVLEPLSGYLQ 241 +ASVR GNVIGGGDFAADRL+PD IRAL+ P+ IR P A+RPWQFVLEPLSGYLQ Sbjct: 181 PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ 240 Query: 242 IARLLYEEGPRHAEAWNFGPADADPRNVGQLCESFNQALRQHDIAPLDIRVESQAHAPHE 301 I ++LYE G +AEAWNFGP D D + V QLC +FN +L+++D+ P+++R+E QA A Sbjct: 241 IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLE-QAGATLS 299 Query: 302 AHLLRLDISKARQRLNWTPKLELTVALQMTARWYAAYLNNDDLRTLTEEQIGFYQTLT 359 +LRLD SKARQRL+W P++EL AL++TA+WYA YLNN+DLR L+E QI FYQ+LT Sbjct: 300 EAVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSLT 357 >ref|YP_003023183.1| CDP-glucose 4,6-dehydratase [Geobacter sp. M21] gb|ACT19425.1| CDP-glucose 4,6-dehydratase [Geobacter sp. M21] Length = 372 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 200/354 (56%), Positives = 252/354 (71%), Gaps = 9/354 (2%) Query: 5 FWRDKRVFITGHTGFKGGWLSLWLHMMGAKVSGYSLPAPTHPSLFELARLHDCVQTTTGD 64 F+R +RV +TGHTGFKG WLSLWLH +GA+V+GY+L PT PSLFELA L + V + TGD Sbjct: 16 FFRGRRVLVTGHTGFKGSWLSLWLHRLGAQVTGYALSPPTDPSLFELAGLAELVHSVTGD 75 Query: 65 VRDPVHLAQTMAAVQPDVVFHLAAQALVRDSYANPVDNYATNVMGTVHVLEAVRHTPSVR 124 VRD L + P++V H+AAQ LVR+SY NPV+ Y+TNVMGTVH+LEAVR++P V+ Sbjct: 76 VRDQAALTTAVKDAAPEIVIHMAAQPLVRESYLNPVETYSTNVMGTVHLLEAVRNSPGVK 135 Query: 125 SVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGIAELVTSAYRRSFFGER---DAG 181 +VV VT+DKCYENREW WGYRE++PMGG+DPYSSSKG +ELVT+AYR S+F E D G Sbjct: 136 AVVNVTTDKCYENREWAWGYRENEPMGGYDPYSSSKGCSELVTAAYRNSYFNETRYADHG 195 Query: 182 RAAIASVRAGNVIGGGDFAADRLLPDVIRALQAQTPLNIRHPGAIRPWQFVLEPLSGYLQ 241 A+AS RAGNVIGGGD+A DRL+PD + AL P+ IR+P AIRPWQ VLEPLSGYL Sbjct: 196 -VALASARAGNVIGGGDWAGDRLIPDCVAALLKHEPVRIRNPHAIRPWQHVLEPLSGYLT 254 Query: 242 IARLLYEEGPRHAEAWNFGPADADPRNVGQLCESFNQALRQHDIAPLDIRVESQAHAPHE 301 +A+ LY+EGPR+A AWNFGP D D R V + + + +D Q PHE Sbjct: 255 LAQRLYQEGPRYAGAWNFGPGDDDAREVEWIVKRMCSRWQGEARYEVD-----QGEHPHE 309 Query: 302 AHLLRLDISKARQRLNWTPKLELTVALQMTARWYAAYLNNDDLRTLTEEQIGFY 355 AH L+LD SKA+ +L W+P+ L A++ W AY D+LR + +QI Y Sbjct: 310 AHYLKLDCSKAKAKLGWSPRWSLETAIEKIIDWSLAYQRGDELRAVCLQQIDSY 363 >ref|YP_002137675.2| CDP-glucose 4,6-dehydratase [Geobacter bemidjiensis Bem] gb|ACH37879.2| CDP-glucose 4,6-dehydratase [Geobacter bemidjiensis Bem] Length = 370 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 206/355 (58%), Positives = 256/355 (72%), Gaps = 7/355 (1%) Query: 3 SNFWRDKRVFITGHTGFKGGWLSLWLHMMGAKVSGYSLPAPTHPSLFELARLHDCVQTTT 62 S FWR K+VF+TGHTGFKGGWLSLWL M+GA+V+GY+L PT PSLFEL R+ + V + Sbjct: 18 SCFWRGKKVFLTGHTGFKGGWLSLWLSMLGAQVTGYALTPPTVPSLFELCRVGETVDSVI 77 Query: 63 GDVRDPVHLAQTMAAVQPDVVFHLAAQALVRDSYANPVDNYATNVMGTVHVLEAVRHTPS 122 GDVRD LA + A P++V H+AAQ LVRDSY NPV+ Y NVMGTVH+L+AVR Sbjct: 78 GDVRDAEKLAAALKAAAPEIVIHMAAQPLVRDSYLNPVETYGINVMGTVHLLDAVRRCQG 137 Query: 123 VRSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGIAELVTSAYRRSFF--GERDA 180 V++VV VT+DKCYENREW+WGYRE++PMGG+DPYS+SKG +ELVTSAYR SFF + Sbjct: 138 VKAVVNVTTDKCYENREWIWGYRENEPMGGYDPYSNSKGCSELVTSAYRNSFFNPASYQS 197 Query: 181 GRAAIASVRAGNVIGGGDFAADRLLPDVIRALQAQTPLNIRHPGAIRPWQFVLEPLSGYL 240 A+A+ RAGNVIGGGD+AADRL+PD I AL P+ IR+P AIRPWQ VLEPLSGYL Sbjct: 198 HGVAVATARAGNVIGGGDWAADRLVPDAIGALMRGEPIRIRNPHAIRPWQHVLEPLSGYL 257 Query: 241 QIARLLYEEGPRHAEAWNFGPADADPRNVGQLCESFNQALRQHDIAPLDIRVESQAHAPH 300 +A+ LYEEGPR A AWNFGP+D D + V + + A+ D + +V+ H PH Sbjct: 258 LLAQRLYEEGPRFASAWNFGPSDDDAKPVEWIVRNLC-AVWGGDPS---YQVDDGEH-PH 312 Query: 301 EAHLLRLDISKARQRLNWTPKLELTVALQMTARWYAAYLNNDDLRTLTEEQIGFY 355 EAH L+LD SKA L W P+ +L AL+ W AYLN++DLR + +QI Y Sbjct: 313 EAHYLKLDCSKACSELAWQPRWKLEEALERIVDWTRAYLNDEDLREVCFQQITAY 367 >ref|NP_992204.1| putative CDP-D-glucose-4,6-dehydratase [Yersinia pestis biovar Microtus str. 91001] gb|AAS61081.1| putative CDP-D-glucose-4,6-dehydratase [Yersinia pestis biovar Microtus str. 91001] Length = 380 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 195/358 (54%), Positives = 256/358 (71%), Gaps = 8/358 (2%) Query: 1 MMSN-FWRDKRVFITGHTGFKGGWLSLWLHMMGAKVSGYSLPAPTHPSLFELARLHDCVQ 59 M++N FW+ KRVF+TGHTGFKGGWLSLWL MGA V GYSLP PT PSLFE AR+ D +Q Sbjct: 24 MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLPPPTVPSLFETARVADGMQ 83 Query: 60 TTTGDVRDPVHLAQTMAAVQPDVVFHLAAQALVRDSYANPVDNYATNVMGTVHVLEAVRH 119 + GD+RD L +++ QP++VFH+AAQ LVR SY+ PV+ Y+TNVMGTV++LEA+RH Sbjct: 84 SEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRH 143 Query: 120 TPSVRSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGIAELVTSAYRRSFFGERD 179 V++VV +TSDKCY+N+EW+WGYRE++ MGG+DPYS+SKG AELVTS+YR SFF + Sbjct: 144 VGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPAN 203 Query: 180 AGR--AAIASVRAGNVIGGGDFAADRLLPDVIRALQAQTPLNIRHPGAIRPWQFVLEPLS 237 G+ A+A+VRAGNVIGGGD+A DR++PD++RA + P+ IR+P AIRPWQ VLEPLS Sbjct: 204 YGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLS 263 Query: 238 GYLQIARLLYEEGPRHAEAWNFGPADADPRNVGQLCESFNQALRQHDIAPLDIRVESQAH 297 GYL +A+ LY +G +AE WNFGP DAD V + E + + LD AH Sbjct: 264 GYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLD----GNAH 319 Query: 298 APHEAHLLRLDISKARQRLNWTPKLELTVALQMTARWYAAYLNNDDLRTLTEEQIGFY 355 PHEAH L+LD SKA+ +L W P+ L L+ W+ +L+ D+ + +I Y Sbjct: 320 -PHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTDMHEYSITEINNY 376 >gb|AAN23037.1|AF461768_3 CDP-glucose-4,6-dehydratase [Yersinia pseudotuberculosis] Length = 391 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 195/358 (54%), Positives = 256/358 (71%), Gaps = 8/358 (2%) Query: 1 MMSN-FWRDKRVFITGHTGFKGGWLSLWLHMMGAKVSGYSLPAPTHPSLFELARLHDCVQ 59 M++N FW+ KRVF+TGHTGFKGGWLSLWL MGAKV GYSL PT PSLFE AR+ D +Q Sbjct: 35 MINNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGAKVKGYSLTPPTVPSLFETARVADGMQ 94 Query: 60 TTTGDVRDPVHLAQTMAAVQPDVVFHLAAQALVRDSYANPVDNYATNVMGTVHVLEAVRH 119 + GD+RD L +++ QP++VFH+AAQ LVR SY+ PV+ Y+TNVMGTV++LEA+RH Sbjct: 95 SEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRH 154 Query: 120 TPSVRSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGIAELVTSAYRRSFFGERD 179 V++VV +TSDKCY+N+EW+WGYRE++ MGG+DPYS+SKG AELVTS+YR SFF + Sbjct: 155 VGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPAN 214 Query: 180 AGR--AAIASVRAGNVIGGGDFAADRLLPDVIRALQAQTPLNIRHPGAIRPWQFVLEPLS 237 G+ A+A+VRAGNVIGGGD+A DR++PD++RA + P+ IR+P AIRPWQ VLEPLS Sbjct: 215 YGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLS 274 Query: 238 GYLQIARLLYEEGPRHAEAWNFGPADADPRNVGQLCESFNQALRQHDIAPLDIRVESQAH 297 GYL +A+ LY +G +AE WNFGP DAD V + E + + LD AH Sbjct: 275 GYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLD----GNAH 330 Query: 298 APHEAHLLRLDISKARQRLNWTPKLELTVALQMTARWYAAYLNNDDLRTLTEEQIGFY 355 PHEAH L+LD SKA+ +L W P+ L L+ W+ +L+ D+ + +I Y Sbjct: 331 -PHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTDMHEYSITEINNY 387