BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5614.p (484 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777746.1| transcription regulator protein [Herbaspiril... 662 0.0 ref|YP_001185735.1| putative metal dependent phosphohydrolase [P... 404 e-110 ref|YP_004378059.1| putative metal dependent phosphohydrolase [P... 396 e-108 ref|YP_004349678.1| putative metal dependent phosphohydrolase [B... 384 e-104 ref|YP_004153059.1| LuxR family transcriptional regulator [Vario... 369 e-100 >ref|YP_003777746.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65838.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 485 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 423/485 (87%), Positives = 440/485 (90%), Gaps = 1/485 (0%) Query: 1 MPDAIHPAAPVSPPNVPAQVAVRALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADEST 60 MPDAIHPAAPVS P VPAQVAVRALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADEST Sbjct: 1 MPDAIHPAAPVSSPTVPAQVAVRALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADEST 60 Query: 61 ARHAALVSLLRWSGCTANAAGFATLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHC 120 ARHAALVSLLRWSGCTANAAGFATLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHC Sbjct: 61 ARHAALVSLLRWSGCTANAAGFATLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHC 120 Query: 121 EVAGEVAALLGLPGRVETGLRHVWEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRT 180 EVAGEVAALLGLPG VE GLRHVWEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRT Sbjct: 121 EVAGEVAALLGLPGPVEIGLRHVWEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRT 180 Query: 181 HPVAAACQMILQLGGVKYPNAMAQLAVAHAPALLAALEQGGDIDADLPAHPVALSIVADL 240 HPVAAACQMILQLGGVKYPNAMAQLAVAHAPALLAALEQGGDIDADLPAHPVALSIVA+L Sbjct: 181 HPVAAACQMILQLGGVKYPNAMAQLAVAHAPALLAALEQGGDIDADLPAHPVALSIVAEL 240 Query: 241 IELKLPWLTGYSRRVSELVQRAAVLAGLPVEQQERLARAALIHGIGRASVSNTIWEREGR 300 IELKLPWLTGYSRRV+EL RAA LAGL EQ +RL RAAL+HGIGRASVSNTIWER GR Sbjct: 241 IELKLPWLTGYSRRVAELAVRAAALAGLDPEQGQRLERAALLHGIGRASVSNTIWERPGR 300 Query: 301 PGQADWERIRLAPYWTARAGALIPGLHHEAALASQLYERLDGSGYFRGLDADMLGLPARL 360 P ADWERIRLAPYWTARAGALIP L EA LAS+LYERLDGSGYFR LD D L +PARL Sbjct: 301 PSAADWERIRLAPYWTARAGALIPALRDEAELASRLYERLDGSGYFRNLDRDSLAMPARL 360 Query: 361 LAAASVQAALCARRPWREAYAPQAAGEVLQEQARLGRVDPEAVRWVLAAAAGEGVPLP-V 419 LAAA+ AALCA RPWR A + A + LQ A+ G DP+AV+WV+AAAAG+G +P + Sbjct: 361 LAAAAALAALCAPRPWRGAMSEPDACQQLQADAQAGLFDPQAVQWVVAAAAGQGGAMPSL 420 Query: 420 RKGLLSEREVEVLRRISLGESNKEAARTMQISPSTVRTHVESIFRKLQCSTRAAATLKGL 479 + LLSERE EVLRRISLGESNKEAAR MQISPSTVRTHVESIFRKLQCSTRAAATLKGL Sbjct: 421 PRRLLSEREAEVLRRISLGESNKEAARAMQISPSTVRTHVESIFRKLQCSTRAAATLKGL 480 Query: 480 HLGLI 484 LGLI Sbjct: 481 SLGLI 485 >ref|YP_001185735.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] gb|ABP83003.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] Length = 474 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 255/463 (55%), Positives = 302/463 (65%), Gaps = 3/463 (0%) Query: 24 ALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADESTARHAALVSLLRWSGCTANAAGFA 83 ALA+ GDLSMGQP DQS R ARLA LAQ G D + A V+LLRWSGCTANA GF Sbjct: 13 ALAMVGDLSMGQPIDQSRRTARLAQWLAQACGGDRAQIDAARQVALLRWSGCTANADGFM 72 Query: 84 TLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHCEVAGEVAALLGLPGRVETGLRHV 143 LLGDDVGGR AML Q L PLA +HCEVAG++A L L VE GLRH+ Sbjct: 73 RLLGDDVGGRRAMLAQTLDAAGQRAMLRTTPLAQVHCEVAGDIARTLALGTEVERGLRHI 132 Query: 144 WEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRTHPVAAACQMILQLGGVKYPNAMA 203 +E +DGSG P L H +PPVVY LAGDLEILSR H + A + I G +YP +A Sbjct: 133 FECFDGSGRPLGLRHPDVPPVVYQVVLAGDLEILSRAHGLDVALEWIGAQGDRRYPAVLA 192 Query: 204 QLAVAHAPALLAALEQGGDIDADLPAHPVALSIVADLIELKLPWLTGYSRRVSELVQRAA 263 L HA L AL + A A V L++V D+I+LKLPWL GYSR+ + LV+ AA Sbjct: 193 DLLARHAADWLQALRTPEGVQAASGAE-VPLTLVGDVIDLKLPWLAGYSRQAASLVRDAA 251 Query: 264 VLAGLPVEQQERLARAALIHGIGRASVSNTIWEREGRPGQADWERIRLAPYWTARAGALI 323 L GLP + E LA+AALIHG+GRA+V N IW G D E +RL PYWT RA + I Sbjct: 252 RLWGLPEARIELLAKAALIHGVGRAAVPNRIWSTPGPLLDGDLEAVRLVPYWTHRACSQI 311 Query: 324 PGLHHEAALASQLYERLDGSGYFRGLDADMLGLPARLLAAASVQAALCARRPWREAYAPQ 383 GL+ LA+ YERLDGSGYFR L D L + RLL+AA AL RPWR A++ + Sbjct: 312 GGLNEAGQLAAHAYERLDGSGYFRSLSGDALQVEHRLLSAALAWLALRGERPWRAAFSDE 371 Query: 384 AAGEVLQEQARLGRVDPEAVRWVLAAAAGEGVPLPVR--KGLLSEREVEVLRRISLGESN 441 A VL ++A GR DP A + V++AA GE PL + GLLSERE ++L+RIS G SN Sbjct: 372 QAARVLLDEAEQGRFDPRACQAVISAAHGEQAPLAGKPGNGLLSERETQILQRISSGASN 431 Query: 442 KEAARTMQISPSTVRTHVESIFRKLQCSTRAAATLKGLHLGLI 484 KE AR + ISPSTVRTHVES+FRKLQCSTRAAATLK L LG+I Sbjct: 432 KEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGVI 474 >ref|YP_004378059.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] gb|AEB56307.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] Length = 476 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 254/473 (53%), Positives = 301/473 (63%), Gaps = 7/473 (1%) Query: 16 VPAQVAVRALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADESTARHAALVSLLRWSGC 75 V + A+ ALA+ GDLSMGQP DQS R ARLA L Q G D + A V+LLRWSGC Sbjct: 7 VALEDAMLALAMVGDLSMGQPIDQSRRTARLAKWLVQAAGGDRAQIDAARQVALLRWSGC 66 Query: 76 TANAAGFATLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHCEVAGEVAALLGLPGR 135 TANA GF L GDDVGGR ML L PLA +HCEVAGEVA L LP + Sbjct: 67 TANAEGFMRLFGDDVGGRRDMLAHTLDAAGQRAMLRTTPLAVVHCEVAGEVARTLDLPVQ 126 Query: 136 VETGLRHVWEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRTHPVAAACQMILQLGG 195 VE GLRH++E +DGSG P L H IP VVY LAGDLEILSR H + A + I G Sbjct: 127 VELGLRHIFECFDGSGRPLGLRHPDIPQVVYQVVLAGDLEILSRVHGLEATLEWIAAQGD 186 Query: 196 VKYPNAMAQLAVAHAPALLAALEQGGDIDADLP--AHPVALSIVADLIELKLPWLTGYSR 253 +YP +A+L V HA L AL ++ LP V+L++V D+I+LKL W+ GYSR Sbjct: 187 RRYPAGLAELIVRHAADWLEALRTP---ESMLPGVGPQVSLTLVGDVIDLKLSWMAGYSR 243 Query: 254 RVSELVQRAAVLAGLPVEQQERLARAALIHGIGRASVSNTIWEREGRPGQADWERIRLAP 313 + S LV+ A L GLP + E LA+AALIHG+GRA+V N IW G + D E +RL P Sbjct: 244 QASNLVRDAGRLWGLPEPRVELLAKAALIHGLGRAAVPNRIWSTPGPLLEGDLESVRLVP 303 Query: 314 YWTARAGALIPGLHHEAALASQLYERLDGSGYFRGLDADMLGLPARLLAAASVQAALCAR 373 YWT RA + I GL LA+ YERLDGSGYFR L D L RLL+AA AL Sbjct: 304 YWTHRACSQIGGLSEAGQLAAHAYERLDGSGYFRSLSGDALSAEHRLLSAALAWLALRGE 363 Query: 374 RPWREAYAPQAAGEVLQEQARLGRVDPEAVRWVLAAAAGEGVPLPVR--KGLLSEREVEV 431 RPWR A + A VL ++A GR D A + V++AA GE PL + GLLSERE ++ Sbjct: 364 RPWRAALGDEQAARVLLDEAEQGRFDSRACQAVISAAHGEQAPLASKPGNGLLSERETQI 423 Query: 432 LRRISLGESNKEAARTMQISPSTVRTHVESIFRKLQCSTRAAATLKGLHLGLI 484 L+RIS G SNKE AR + ISPSTVRTHVES+FRKLQCSTRAAATLK L LG+I Sbjct: 424 LQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGVI 476 >ref|YP_004349678.1| putative metal dependent phosphohydrolase [Burkholderia gladioli BSR3] gb|AEA64166.1| putative metal dependent phosphohydrolase [Burkholderia gladioli BSR3] Length = 481 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 248/472 (52%), Positives = 297/472 (62%), Gaps = 9/472 (1%) Query: 21 AVRALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADESTARHAALVSLLRWSGCTANAA 80 A+ ALA GDLSMG+ D S R A LA LA GA HA ++LRWSGCTANA+ Sbjct: 11 AILALAFVGDLSMGRSTDHSRRTACLAGWLAAEAGAGPEAQNHARAAAMLRWSGCTANAS 70 Query: 81 GFATLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHCEVAGEVAALLGLPGRVETGL 140 GFA LLGDDV REAM+ Q LP + I PLA IHCE++G++A LG+P V L Sbjct: 71 GFADLLGDDVASREAMMAQRLPPMSAQMHSLIVPLALIHCEISGDIAVTLGMPAGVVLTL 130 Query: 141 RHVWEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRTHPVAAACQMILQLGGVKYPN 200 R ++E +DG G P L +A+P VY +LA DLEIL+R H AA + GG KYP Sbjct: 131 RRIFERHDGKGMPEGLDGDAVPSTVYFVNLASDLEILARAHGREAAVAYLRAQGGAKYPA 190 Query: 201 AMAQLAVAHAPALLAALEQGGDIDA------DLPAHPVALSIVADLIELKLPWLTGYSRR 254 A+A+L +AHA A L L+ G A VALS++AD+ ELKLPWL GY+RR Sbjct: 191 ALAELCIAHAEAWLDTLDAGEPDTAGWRLADQQDTADVALSLLADVTELKLPWLAGYARR 250 Query: 255 VSELVQRAAVLAGLPVEQQERLARAALIHGIGRASVSNTIWEREGRPGQADWERIRLAPY 314 V+ LV RAA GL L AAL+HGIGRA++ N +W+ GR WE++RL PY Sbjct: 251 VASLVSRAAARLGLDAAIGAELEAAALLHGIGRAALPNRLWDTPGRLSSDQWEQVRLVPY 310 Query: 315 WTARAGALIPGLHHEAALASQLYERLDGSGYFRGLDADMLGLPARLLAAASVQAALCARR 374 W+ARA I GL A LAS YERLDGSGYFRGL L +P RLLA A AL R Sbjct: 311 WSARAAQQIGGLRGAAGLASHAYERLDGSGYFRGLSGTALDVPQRLLAGAVACQALLDAR 370 Query: 375 PWREAYAPQAAGEVLQEQARLGRVDPEAVRWVLAAAAGEGVPLPVRKG--LLSEREVEVL 432 PWR A++ AA +LQ +A GR DPE + V+ A G P P R LLS RE+EVL Sbjct: 371 PWRAAHSIDAAAGLLQAEASAGRFDPEVIAAVVETAGGPA-PAPRRPATPLLSPREIEVL 429 Query: 433 RRISLGESNKEAARTMQISPSTVRTHVESIFRKLQCSTRAAATLKGLHLGLI 484 R+IS G SNKEAAR + +SPSTVRTHVESIFRKL CSTRAAATLK L GL+ Sbjct: 430 RQISGGLSNKEAARVLALSPSTVRTHVESIFRKLDCSTRAAATLKALTTGLL 481 >ref|YP_004153059.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU34948.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 482 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 230/478 (48%), Positives = 298/478 (62%), Gaps = 7/478 (1%) Query: 14 PNVPAQVAVRALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADESTARHAALVSLLRWS 73 P++P A++ALA GDLSMGQP D S R A +A +LA G D + HAA SLLRWS Sbjct: 5 PHIPVFDAIKALAFVGDLSMGQPIDHSARTAWIASQLAAALGRDATVQGHAACASLLRWS 64 Query: 74 GCTANAAGFATLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHCEVAGEVAALLGLP 133 GCTANA F+ L+GDDVGGR AML A++ P+A IHCEV+G++A LG+P Sbjct: 65 GCTANAPEFSDLMGDDVGGRRAMLSNASASAAAELAASVGPMAEIHCEVSGDIARTLGMP 124 Query: 134 GRVETGLRHVWEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRTHPVAAACQMILQL 193 VE LRH++E +DG G P L IP V++ S+AGDLEI SR H ++ A + I Sbjct: 125 PGVERTLRHMFETFDGQGKPHGLRASQIPEEVFIVSVAGDLEIFSRVHGLSNALRYIADR 184 Query: 194 GGVKYPNAMAQLAVAHAPALLAALEQGGDIDADLPAHPV-----ALSIVADLIELKLPWL 248 +YP + HA L ALEQG D P++ + +L ++AD+I+LKLPW+ Sbjct: 185 ADARYPAFVVDAVQQHAVDWLHALEQGAAADMQSPSNALRETTTSLELIADVIDLKLPWM 244 Query: 249 TGYSRRVSELVQRAAVLAGLPVEQQERLARAALIHGIGRASVSNTIWEREGRPGQADWER 308 TG+SRRV++ A GL +Q ++ RAALIHGIGRASV N +W+ G +AD ER Sbjct: 245 TGFSRRVADAAFACAAGVGLGDVEQGQVRRAALIHGIGRASVPNAVWDSPGVQSEADKER 304 Query: 309 IRLAPYWTARAGALIPGLHHEAALASQLYERLDGSGYFRGLDADMLGLPARLLAAASVQA 368 +RL PYWT RA I L EA +AS + ERLDGSG+FRG+ + + R+LA A+ Sbjct: 305 LRLVPYWTDRAARRIGTLRTEAEIASFVDERLDGSGFFRGIKGPAIDVAGRVLAVAAHWV 364 Query: 369 ALCARRPWREAYAPQAAGEVLQEQARLGRVDPEAVRWVLAAAAGEGVPLPVRK--GLLSE 426 L RP + A A L+ +A LGR+D AV + E P + LLS Sbjct: 365 LLRTSRPGQAALDEADAIAALKREAELGRLDAAAVAVLTGHPQTETAIAPSNEAAALLSS 424 Query: 427 REVEVLRRISLGESNKEAARTMQISPSTVRTHVESIFRKLQCSTRAAATLKGLHLGLI 484 RE+EVL RISLG+SNKEAAR + ISPSTVR H+E+IFRKL+C+TRAAATLK L LGL+ Sbjct: 425 REIEVLGRISLGDSNKEAARVLGISPSTVRAHLENIFRKLECTTRAAATLKALTLGLL 482