BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5611.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004041138.1| hypothetical protein MPQ_2763 [Methylovorus ...    54   7e-06

>ref|YP_004041138.1| hypothetical protein MPQ_2763 [Methylovorus sp. MP688]
 gb|ADQ85902.1| hypothetical protein MPQ_2763 [Methylovorus sp. MP688]
          Length = 84

 Score = 54.3 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 39/73 (53%)

Query: 7  GDERVCECEQHGDTNADQEGRVDQASQQEHLGLQGVHQFRLTCGCFEVLTAHDRDTDTSA 66
          G E VCE + H  TN D E  VDQ  QQEH  LQ  + F L    F+  + HD DT  SA
Sbjct: 5  GKEWVCESKHHSQTNTDNERSVDQTQQQEHFTLQSWNHFWLASCTFQEASTHDTDTYASA 64

Query: 67 DSTQANDQTASQS 79
             + NDQT + +
Sbjct: 65 SCAKTNDQTDTNT 77