BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5606.p (466 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777738.1| F0F1-type ATP synthase subunit beta [Herbasp... 909 0.0 ref|YP_001355317.1| F0F1 ATP synthase subunit beta [Janthinobact... 880 0.0 ref|YP_001101627.1| F0F1 ATP synthase subunit beta [Herminiimona... 876 0.0 ref|YP_004755036.1| ATP synthase subunit beta [Collimonas fungiv... 876 0.0 ref|YP_521398.1| F0F1 ATP synthase subunit beta [Rhodoferax ferr... 833 0.0 >ref|YP_003777738.1| F0F1-type ATP synthase subunit beta [Herbaspirillum seropedicae SmR1] emb|CAM32670.1| F0F1-type ATP synthase, beta subunit protein [Herbaspirillum seropedicae] gb|ADJ65830.1| F0F1-type ATP synthase, beta subunit protein [Herbaspirillum seropedicae SmR1] Length = 466 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 464/466 (99%), Positives = 466/466 (100%) Query: 1 MADGKIVQCIGAVVDVEFPRNAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 MADGKIVQCIGAVVDVEFPR+AMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG Sbjct: 1 MADGKIVQCIGAVVDVEFPRDAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 Query: 61 LRRGLTISNTGKPISVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 LRRGLTISNTGKPI+VPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP Sbjct: 61 LRRGLTISNTGKPITVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG Sbjct: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 Query: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ Sbjct: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY Sbjct: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 Query: 361 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP 420 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP Sbjct: 361 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP 420 Query: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN Sbjct: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 >ref|YP_001355317.1| F0F1 ATP synthase subunit beta [Janthinobacterium sp. Marseille] sp|A6T470|ATPB_JANMA RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta gb|ABR88891.1| F-type H+-transporting ATPase beta chain [Janthinobacterium sp. Marseille] Length = 466 Score = 880 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 441/466 (94%), Positives = 459/466 (98%) Query: 1 MADGKIVQCIGAVVDVEFPRNAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 MADGKIVQCIGAVVDVEFPRNAMPK+YDALK+ GS+LTLEVQQQLGDG+VRTIALG+SDG Sbjct: 1 MADGKIVQCIGAVVDVEFPRNAMPKIYDALKMAGSELTLEVQQQLGDGIVRTIALGTSDG 60 Query: 61 LRRGLTISNTGKPISVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 LRRG+ I NTG PI+VPVGTATLGRIMDVLGNPIDECGPVSHE+TASIHRKAPAYDELSP Sbjct: 61 LRRGMIIQNTGNPITVPVGTATLGRIMDVLGNPIDECGPVSHERTASIHRKAPAYDELSP 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 SQ+LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 SQDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 RTREGNDFYHEMA+AKVVDLENP NSKVAMVYGQMNEPPGNRLRVALTGLT+AE FRDEG Sbjct: 181 RTREGNDFYHEMADAKVVDLENPANSKVAMVYGQMNEPPGNRLRVALTGLTMAEAFRDEG 240 Query: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 KDVLFFVDNIYR+TLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ Sbjct: 241 KDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDP VVGQ+HY Sbjct: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGQDHY 360 Query: 361 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP 420 +TARAVQGTLQRYKELRDIIAILGMDELAPEDKL+VARARKMQRFLSQPFHVAEVFTG+P Sbjct: 361 DTARAVQGTLQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAEVFTGAP 420 Query: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTI+EAIEKAKK+N Sbjct: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKLN 466 >ref|YP_001101627.1| F0F1 ATP synthase subunit beta [Herminiimonas arsenicoxydans] sp|A4GAG9|ATPB_HERAR RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta emb|CAL63506.1| ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) [Herminiimonas arsenicoxydans] Length = 466 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 439/466 (94%), Positives = 457/466 (98%) Query: 1 MADGKIVQCIGAVVDVEFPRNAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 MADGKIVQCIGAVVDVEFPRNAMPK+YDALK+ GS+LTLEVQQQLGDG+VRTIALG+SDG Sbjct: 1 MADGKIVQCIGAVVDVEFPRNAMPKIYDALKMAGSELTLEVQQQLGDGIVRTIALGTSDG 60 Query: 61 LRRGLTISNTGKPISVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 LRRG+ I NTG PI+VPVG ATLGRIMDVLGNPIDECGPVSHE+TASIHRKAPAYDELSP Sbjct: 61 LRRGMIIQNTGNPITVPVGKATLGRIMDVLGNPIDECGPVSHERTASIHRKAPAYDELSP 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 SQ+LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 SQDLLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 RTREGNDFYHEMA+AKVVDLENP NSKVAMVYGQMNEPPGNRLRVALTGLT+AE FRDEG Sbjct: 181 RTREGNDFYHEMADAKVVDLENPENSKVAMVYGQMNEPPGNRLRVALTGLTMAEAFRDEG 240 Query: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 KDVLFFVDNIYR+TLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ Sbjct: 241 KDVLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDP VVGQ+HY Sbjct: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPLVVGQDHY 360 Query: 361 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP 420 +TARAVQGTLQRYKELRDIIAILGMDELAPEDKL+VARARKMQRFLSQPFHVAEVFTG+P Sbjct: 361 DTARAVQGTLQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAEVFTGAP 420 Query: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKIN 466 GKYVSLKDTI GFKMIASGELDHLPEQAFYMVGTI+EAIEKAKK+N Sbjct: 421 GKYVSLKDTINGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKLN 466 >ref|YP_004755036.1| ATP synthase subunit beta [Collimonas fungivorans Ter331] gb|AEK64213.1| ATP synthase beta chain [Collimonas fungivorans Ter331] Length = 466 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 444/465 (95%), Positives = 456/465 (98%) Query: 1 MADGKIVQCIGAVVDVEFPRNAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDG 60 MADGKIVQCIGAVVDVEFPR+AMPK+YDALK++GS+LTLEVQQQLGDGVVRTIALG+SDG Sbjct: 1 MADGKIVQCIGAVVDVEFPRDAMPKIYDALKMDGSELTLEVQQQLGDGVVRTIALGTSDG 60 Query: 61 LRRGLTISNTGKPISVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSP 120 LRRG+TI NTG+PI VP G ATLGRIMDVLGNPIDECGPVSHE TASIHRKAPAYDELSP Sbjct: 61 LRRGMTIKNTGQPIMVPTGKATLGRIMDVLGNPIDECGPVSHETTASIHRKAPAYDELSP 120 Query: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE Sbjct: 121 SQELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE 180 Query: 181 RTREGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 RTREGNDFYHEMA+AKVVDLENP SKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG Sbjct: 181 RTREGNDFYHEMADAKVVDLENPEKSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEG 240 Query: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQ 300 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLA EMG+LQERITSTKTGSITSIQ Sbjct: 241 KDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLASEMGQLQERITSTKTGSITSIQ 300 Query: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY Sbjct: 301 AVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHY 360 Query: 361 ETARAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSP 420 ETARAVQG LQRYKELRDIIAILGMDELAPEDKL+VARARKMQRFLSQPFHVAEVFTGSP Sbjct: 361 ETARAVQGILQRYKELRDIIAILGMDELAPEDKLLVARARKMQRFLSQPFHVAEVFTGSP 420 Query: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKI 465 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTI+EAIEKAKKI Sbjct: 421 GKYVSLKDTIKGFKMIASGELDHLPEQAFYMVGTIEEAIEKAKKI 465 >ref|YP_521398.1| F0F1 ATP synthase subunit beta [Rhodoferax ferrireducens T118] sp|Q223D6|ATPB1_RHOFD RecName: Full=ATP synthase subunit beta 1; AltName: Full=ATP synthase F1 sector subunit beta 1; AltName: Full=F-ATPase subunit beta 1 gb|ABD67867.1| ATP synthase F1, beta subunit [Rhodoferax ferrireducens T118] Length = 474 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 425/462 (91%), Positives = 439/462 (95%) Query: 4 GKIVQCIGAVVDVEFPRNAMPKVYDALKLEGSDLTLEVQQQLGDGVVRTIALGSSDGLRR 63 GKIVQCIGAVVDVEFPR+ MPK+YDALKLEGS LTLEVQQQLGDG+VRTIALGSSDGLRR Sbjct: 13 GKIVQCIGAVVDVEFPRDQMPKIYDALKLEGSALTLEVQQQLGDGIVRTIALGSSDGLRR 72 Query: 64 GLTISNTGKPISVPVGTATLGRIMDVLGNPIDECGPVSHEQTASIHRKAPAYDELSPSQE 123 GL +SNT PI VPVGTATLGRIMDVLG PIDE GPVS E+ ASIHRKAP YDELSPSQE Sbjct: 73 GLMVSNTANPIMVPVGTATLGRIMDVLGTPIDERGPVSTEKYASIHRKAPTYDELSPSQE 132 Query: 124 LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTR 183 LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTR Sbjct: 133 LLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGERTR 192 Query: 184 EGNDFYHEMAEAKVVDLENPTNSKVAMVYGQMNEPPGNRLRVALTGLTIAEGFRDEGKDV 243 EGNDFYHEMA++ VV+LEN SKVAMVYGQMNEPPGNRLRVALTGLTIAE FRDEGKDV Sbjct: 193 EGNDFYHEMADSGVVNLENLGESKVAMVYGQMNEPPGNRLRVALTGLTIAESFRDEGKDV 252 Query: 244 LFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKTGSITSIQAVY 303 LFFVDNIYR+TLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTK GSITSIQAVY Sbjct: 253 LFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVY 312 Query: 304 VPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGQEHYETA 363 VPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDP VVGQ+HYETA Sbjct: 313 VPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPNVVGQDHYETA 372 Query: 364 RAVQGTLQRYKELRDIIAILGMDELAPEDKLIVARARKMQRFLSQPFHVAEVFTGSPGKY 423 RAVQGTLQRYKELRDIIAILGMDELAPEDKL VARARK+QRFLSQPFHVAEVFTGSPGKY Sbjct: 373 RAVQGTLQRYKELRDIIAILGMDELAPEDKLTVARARKIQRFLSQPFHVAEVFTGSPGKY 432 Query: 424 VSLKDTIKGFKMIASGELDHLPEQAFYMVGTIDEAIEKAKKI 465 VSL +TI+GFKMI +GE DHLPEQAFYMVGTIDEA EKAKKI Sbjct: 433 VSLAETIRGFKMIVAGECDHLPEQAFYMVGTIDEAFEKAKKI 474