BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5599.p (365 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777733.1| uroporphyrinogen decarboxylase [Herbaspirill... 683 0.0 ref|YP_004755016.1| uroporphyrinogen III decarboxylase [Collimon... 597 e-169 ref|YP_001355297.1| uroporphyrinogen decarboxylase [Janthinobact... 584 e-165 ref|YP_001101608.1| uroporphyrinogen decarboxylase [Herminiimona... 581 e-164 ref|ZP_08275585.1| Uroporphyrinogen III decarboxylase [Oxalobact... 573 e-161 >ref|YP_003777733.1| uroporphyrinogen decarboxylase [Herbaspirillum seropedicae SmR1] gb|ADJ65825.1| uroporphyrinogen decarboxylase protein [Herbaspirillum seropedicae SmR1] Length = 364 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 339/363 (93%), Positives = 355/363 (97%) Query: 3 SSSSMSTFAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNP 62 SSSSMSTFAPLKNDTFLRALLRQPTDYTP+WLMRQAGRYLPEYRATRARAGSFMGLATNP Sbjct: 2 SSSSMSTFAPLKNDTFLRALLRQPTDYTPMWLMRQAGRYLPEYRATRARAGSFMGLATNP 61 Query: 63 DYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAIQALQ 122 DYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFA+GEGPKF+RPLRDEAA++AL+ Sbjct: 62 DYATEVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFAEGEGPKFQRPLRDEAAVKALR 121 Query: 123 APDLGKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSLLYRR 182 APDLGKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKS+LY R Sbjct: 122 APDLGKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSMLYSR 181 Query: 183 PDLMHHILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSQL 242 PDLMHHIL+TNADAVAAYLNAQI AGAQAVMIFDTWGGALADG+YQQFSL+YMQQVVSQL Sbjct: 182 PDLMHHILRTNADAVAAYLNAQIDAGAQAVMIFDTWGGALADGVYQQFSLSYMQQVVSQL 241 Query: 243 QRQQDGQQIPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLREARRRVGDKVALQGNLDP 302 +R+Q GQQ+PVIVFTKGGGLWLEQIAAIGADAVGLDWTVNL +AR+RVGDKVALQGNLDP Sbjct: 242 KREQGGQQVPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLGQARQRVGDKVALQGNLDP 301 Query: 303 NVLFAGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVATLAQAVHEISRS 362 NVLFAGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAV TL QAVHE SR+ Sbjct: 302 NVLFAGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVTTLVQAVHEFSRA 361 Query: 363 LRG 365 LR Sbjct: 362 LRA 364 >ref|YP_004755016.1| uroporphyrinogen III decarboxylase [Collimonas fungivorans Ter331] gb|AEK64193.1| Uroporphyrinogen III decarboxylase [Collimonas fungivorans Ter331] Length = 362 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 298/359 (83%), Positives = 322/359 (89%) Query: 7 MSTFAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNPDYAT 66 MS FAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYR TR+RAGSFMGLATNPDYAT Sbjct: 4 MSQFAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRKTRSRAGSFMGLATNPDYAT 63 Query: 67 EVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAIQALQAPDL 126 EVTLQPLER+PLDAAILFSDILTVPDAMGLGLYFADGEGPKF RPLRDE + ALQ PDL Sbjct: 64 EVTLQPLERFPLDAAILFSDILTVPDAMGLGLYFADGEGPKFYRPLRDEKDVMALQTPDL 123 Query: 127 GKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSLLYRRPDLM 186 GKLDYVFKAVTQIR EL+GRVPLIGF+GSPWTLACYMVEG GS +F VK++LY RPDLM Sbjct: 124 GKLDYVFKAVTQIRTELNGRVPLIGFAGSPWTLACYMVEGEGSREFHTVKTMLYNRPDLM 183 Query: 187 HHILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSQLQRQQ 246 HH+L TNA AVAAYLNAQI AGAQAVMIFD+WGGALADG YQ+FSL YM+QVVSQLQR++ Sbjct: 184 HHVLSTNAAAVAAYLNAQIDAGAQAVMIFDSWGGALADGAYQEFSLDYMRQVVSQLQREK 243 Query: 247 DGQQIPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLREARRRVGDKVALQGNLDPNVLF 306 DG IP IVFTKGGGLWLEQIA IGADAVGLDWTVNL EAR R+G +VALQGNLDP VLF Sbjct: 244 DGVPIPAIVFTKGGGLWLEQIADIGADAVGLDWTVNLAEARARIGQRVALQGNLDPAVLF 303 Query: 307 AGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVATLAQAVHEISRSLRG 365 A + IR+EV +LL ++G P AGSGHVFNLGHGISQ TPPE+VA + +AVHEISR LRG Sbjct: 304 ANPEQIRSEVARLLNAYGAPQAGSGHVFNLGHGISQFTPPESVAVMVEAVHEISRKLRG 362 >ref|YP_001355297.1| uroporphyrinogen decarboxylase [Janthinobacterium sp. Marseille] sp|A6T450|DCUP_JANMA RecName: Full=Uroporphyrinogen decarboxylase; Short=UPD; Short=URO-D gb|ABR88675.1| uroporphyrinogen decarboxylase [Janthinobacterium sp. Marseille] Length = 360 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 284/356 (79%), Positives = 318/356 (89%) Query: 8 STFAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNPDYATE 67 + FAPL+NDTFLRALLRQPT+YTPLWLMRQAGRYLPEYRATRARAGSF+GLA NPD+ATE Sbjct: 3 TQFAPLQNDTFLRALLRQPTEYTPLWLMRQAGRYLPEYRATRARAGSFLGLAKNPDFATE 62 Query: 68 VTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAIQALQAPDLG 127 VTLQPL+RY LDAAILFSDILTVPDAMGLGLYF +GEGPKFERPLRDE A+QAL+ P+LG Sbjct: 63 VTLQPLDRYKLDAAILFSDILTVPDAMGLGLYFIEGEGPKFERPLRDEKAVQALKVPELG 122 Query: 128 KLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSLLYRRPDLMH 187 L YVF AVTQIR EL GRVPLIGF+GSPWTLACYMVEGGGSDDFR VK++LY RPDLMH Sbjct: 123 SLQYVFDAVTQIRTELKGRVPLIGFTGSPWTLACYMVEGGGSDDFRTVKAMLYNRPDLMH 182 Query: 188 HILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSQLQRQQD 247 HIL+TNA VAAYLNAQI AGAQAVM+FDTWGGALADG YQQFSL YM++V+ ++ ++D Sbjct: 183 HILQTNALTVAAYLNAQIDAGAQAVMMFDTWGGALADGAYQQFSLHYMREVMKHVKTEKD 242 Query: 248 GQQIPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLREARRRVGDKVALQGNLDPNVLFA 307 G +IP IVFTKGGGLWL++IAA+GADAVGLDWTVNL AR +VG++VALQGNLDP++LFA Sbjct: 243 GVRIPSIVFTKGGGLWLKEIAAVGADAVGLDWTVNLGAARAKVGERVALQGNLDPSILFA 302 Query: 308 GDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVATLAQAVHEISRSL 363 D IRAEV K+LESFG+ AGSGHVFNLGHGISQ TPPEAV L AVHE+SR L Sbjct: 303 QPDQIRAEVAKVLESFGKHSAGSGHVFNLGHGISQFTPPEAVTVLVDAVHELSRPL 358 >ref|YP_001101608.1| uroporphyrinogen decarboxylase [Herminiimonas arsenicoxydans] sp|A4GAF0|DCUP_HERAR RecName: Full=Uroporphyrinogen decarboxylase; Short=UPD; Short=URO-D emb|CAL63487.1| Uroporphyrinogen decarboxylase (URO-D) (UPD) [Herminiimonas arsenicoxydans] Length = 360 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 281/356 (78%), Positives = 314/356 (88%) Query: 8 STFAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNPDYATE 67 + FAPLKNDTFLRALLRQPTDYTP+W+MRQAGRYLPEYRATR RAGSF+GLA NPDYATE Sbjct: 3 TPFAPLKNDTFLRALLRQPTDYTPMWMMRQAGRYLPEYRATRTRAGSFLGLAKNPDYATE 62 Query: 68 VTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAIQALQAPDLG 127 VTLQPL+RY LDAAILFSDILTVPDAMGLGLYF DGEGPKFERPLRDE A+QAL+ P+L Sbjct: 63 VTLQPLDRYDLDAAILFSDILTVPDAMGLGLYFVDGEGPKFERPLRDEKAVQALKVPELD 122 Query: 128 KLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSLLYRRPDLMH 187 L YVF AVTQIR EL GRVPLIGFSGSPWTLACYMVEGGGSDDFR VK++LY RPDLMH Sbjct: 123 SLQYVFDAVTQIRTELKGRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKAMLYNRPDLMH 182 Query: 188 HILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSQLQRQQD 247 HIL+TNA VAAYLNAQI AGAQAVM+FDTWGGALADGIYQQFSL YM++V+ ++ +++ Sbjct: 183 HILQTNAITVAAYLNAQIDAGAQAVMMFDTWGGALADGIYQQFSLHYMREVMKHVKTEKE 242 Query: 248 GQQIPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLREARRRVGDKVALQGNLDPNVLFA 307 G +IP IVFTKGGGLWL +IA +GADAVGLDWTVNL AR +VGD+VALQGNLDP++LFA Sbjct: 243 GVRIPSIVFTKGGGLWLNEIADVGADAVGLDWTVNLGAARAQVGDRVALQGNLDPSILFA 302 Query: 308 GDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVATLAQAVHEISRSL 363 + IR EV K+L SFG+ GSGHVFNLGHGISQ TPPE+V+ L AVHE+SRSL Sbjct: 303 QPEQIRTEVEKVLMSFGKHAPGSGHVFNLGHGISQFTPPESVSVLVDAVHELSRSL 358 >ref|ZP_08275585.1| Uroporphyrinogen III decarboxylase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30945.1| Uroporphyrinogen III decarboxylase [Oxalobacteraceae bacterium IMCC9480] Length = 359 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 288/359 (80%), Positives = 312/359 (86%), Gaps = 1/359 (0%) Query: 7 MST-FAPLKNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNPDYA 65 MST FAPLKNDTFLRALLRQPTDYTP+WLMRQAGRYLPEYRATRARAGSF+GLA NPDYA Sbjct: 1 MSTKFAPLKNDTFLRALLRQPTDYTPVWLMRQAGRYLPEYRATRARAGSFLGLAKNPDYA 60 Query: 66 TEVTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAIQALQAPD 125 TEVTLQPL+R+PLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAA+ ALQ PD Sbjct: 61 TEVTLQPLDRFPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAVMALQVPD 120 Query: 126 LGKLDYVFKAVTQIRRELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSLLYRRPDL 185 LG L YV+ AVTQIR ELDGRVPLIGFSGSPWTLACYMVEGGGSDDFR VKS+LY RPDL Sbjct: 121 LGDLQYVYDAVTQIRTELDGRVPLIGFSGSPWTLACYMVEGGGSDDFRRVKSMLYDRPDL 180 Query: 186 MHHILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSQLQRQ 245 MH IL NA AVA YLNAQIAAGAQAVMIFD+WGGALADG YQ+FSL YM++VV+QL Sbjct: 181 MHRILSINATAVAGYLNAQIAAGAQAVMIFDSWGGALADGAYQKFSLDYMREVVAQLHLD 240 Query: 246 QDGQQIPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLREARRRVGDKVALQGNLDPNVL 305 Q+G ++P IVFTKGGGLWL+QIA IGADAVGLDWTVNL AR +VG KVALQGNLDP L Sbjct: 241 QEGGRVPCIVFTKGGGLWLDQIADIGADAVGLDWTVNLGRARTQVGHKVALQGNLDPVAL 300 Query: 306 FAGDDAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPEAVATLAQAVHEISRSLR 364 FA + I AEV L S+G P G GHVFNLGHGISQ T P+AVA + AVH +SR++R Sbjct: 301 FAKPEQIHAEVASALASYGAPSEGHGHVFNLGHGISQFTQPDAVAVMVDAVHSLSRAMR 359