BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5579.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004153635.1| shikimate kinase [Variovorax paradoxus EPS] ... 193 8e-48 ref|YP_373056.1| hypothetical protein Bcep18194_B2301 [Burkholde... 176 2e-42 ref|YP_777401.1| hypothetical protein Bamb_5520 [Burkholderia am... 169 1e-40 ref|ZP_06057391.1| conserved hypothetical protein [Acinetobacter... 147 1e-33 ref|YP_827313.1| hypothetical protein Acid_6097 [Candidatus Soli... 113 1e-23 >ref|YP_004153635.1| shikimate kinase [Variovorax paradoxus EPS] gb|ADU35524.1| shikimate kinase [Variovorax paradoxus EPS] Length = 187 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 96/179 (53%), Positives = 120/179 (67%) Query: 4 VLHLAGPGGAGKTSVGKLLGKLLAWEFIDLDESFISSAGDISAFIETKGYRAYAQRNLAI 63 V+HL GPGGAGKT+ G LL L W F+DLD FI+ GD++A++ GY YAQRN+A+ Sbjct: 9 VVHLVGPGGAGKTTAGPLLAGRLGWRFVDLDREFIAREGDVAAYMAVHGYAGYAQRNVAV 68 Query: 64 YESIVSIGNAPVVLALSSGFITYPADVAEGYLGLRHRIEHNPLSVLLLPSFELEECVEII 123 Y ++ +AP V ALSSGF+TY A Y LR IEH L+ LLLPSF+LE CVE I Sbjct: 69 YREAMNARSAPTVFALSSGFMTYGATTEAQYAVLRQAIEHGALTALLLPSFDLETCVEAI 128 Query: 124 VSRQMGRHYLNGNSHREEEKIRQRFPAFMSFECTRFLSNVPVTELACRIMRFARERKPA 182 V RQ+ R YL+GN EE +IR+RFPAFM+ +C RF S+ ELA RI +F R R A Sbjct: 129 VQRQLARPYLSGNRANEEARIRERFPAFMALQCARFDSSEAPRELAMRIEQFVRARCAA 187 >ref|YP_373056.1| hypothetical protein Bcep18194_B2301 [Burkholderia sp. 383] gb|ABB12412.1| hypothetical protein Bcep18194_B2301 [Burkholderia sp. 383] Length = 204 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 84/178 (47%), Positives = 112/178 (62%) Query: 5 LHLAGPGGAGKTSVGKLLGKLLAWEFIDLDESFISSAGDISAFIETKGYRAYAQRNLAIY 64 +HL GPGGAGKT+ G L+ L W F+D+D+ F+++ G+I+ FI +GY YA N+ +Y Sbjct: 12 VHLIGPGGAGKTTAGALVAARLNWRFVDVDQCFLATHGNIAEFIRDRGYAEYASHNVGLY 71 Query: 65 ESIVSIGNAPVVLALSSGFITYPADVAEGYLGLRHRIEHNPLSVLLLPSFELEECVEIIV 124 E + + P + A+SSGF+ YP DVA Y LR IE + + LLLPSF+LE C ++IV Sbjct: 72 EQLERDMSVPTICAVSSGFMLYPDDVAPTYPALRRGIEADGFTALLLPSFDLERCAKVIV 131 Query: 125 SRQMGRHYLNGNSHREEEKIRQRFPAFMSFECTRFLSNVPVTELACRIMRFARERKPA 182 RQM R YLN N E KIR RFPAFM C RF S+ P ++A I RF P+ Sbjct: 132 GRQMSRPYLNANEADEMRKIRDRFPAFMRLNCKRFESDGPPEQVAADIERFIVASMPS 189 >ref|YP_777401.1| hypothetical protein Bamb_5520 [Burkholderia ambifaria AMMD] gb|ABI91067.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 219 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 81/179 (45%), Positives = 110/179 (61%) Query: 4 VLHLAGPGGAGKTSVGKLLGKLLAWEFIDLDESFISSAGDISAFIETKGYRAYAQRNLAI 63 ++HL GPGGAGKT+VG L+ L W +D+D+ F+++ G I+ FI +GY YA N+ + Sbjct: 11 LVHLIGPGGAGKTTVGALVAARLNWRCLDVDQYFLAAHGSIADFIRDRGYVEYAAHNVRL 70 Query: 64 YESIVSIGNAPVVLALSSGFITYPADVAEGYLGLRHRIEHNPLSVLLLPSFELEECVEII 123 YE + + P + +SSGF+ YP +VA Y LR IE + + LLLPSF+LE C +++ Sbjct: 71 YEQLKRGTSVPTICVMSSGFMLYPPEVAPAYPALRRGIEEDGYTALLLPSFDLERCAKLV 130 Query: 124 VSRQMGRHYLNGNSHREEEKIRQRFPAFMSFECTRFLSNVPVTELACRIMRFARERKPA 182 V RQM R YLN N E KIR RFPAFM C RF S+ P +A I RF P+ Sbjct: 131 VGRQMSRPYLNANEDDEMRKIRDRFPAFMRLNCKRFASDGPPEHVAADIERFIVASMPS 189 >ref|ZP_06057391.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gb|EEY78690.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 186 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 73/173 (42%), Positives = 111/173 (64%), Gaps = 2/173 (1%) Query: 4 VLHLAGPGGAGKTSVGKLLGKLLAWEFIDLDESFISSAGDISAFIETKGYRAYAQRNLAI 63 ++H GPGGAGKTS+ K + DLDE F+ GDIS FI Y+ YA +N+ + Sbjct: 2 LIHFIGPGGAGKTSLAKQFAIDFGAIYYDLDEHFMLEIGDISQFIAKYSYKEYAIKNIEL 61 Query: 64 YESIVSIGNAPVV--LALSSGFITYPADVAEGYLGLRHRIEHNPLSVLLLPSFELEECVE 121 Y ++++ N +V + SSGF+TYP ++ + Y ++ +IE + L+ LLLPSFELE CV+ Sbjct: 62 YRNLITTLNPDLVNIIVCSSGFMTYPNELMDSYEEIKTQIEESSLTFLLLPSFELEICVK 121 Query: 122 IIVSRQMGRHYLNGNSHREEEKIRQRFPAFMSFECTRFLSNVPVTELACRIMR 174 IV RQ+ R YLN +S EE+KIR RFP +++ +C R L+N +++A + + Sbjct: 122 EIVRRQLQREYLNCSSGSEEKKIRNRFPLYINLKCQRILTNEEPSKIAFELYK 174 >ref|YP_827313.1| hypothetical protein Acid_6097 [Candidatus Solibacter usitatus Ellin6076] gb|ABJ87028.1| conserved hypothetical protein [Candidatus Solibacter usitatus Ellin6076] Length = 202 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 4 VLHLAGPGGAGKTSVGKLLGKLLAWEFIDLDESFISSAGDISAFIETKGYRAYAQRNLAI 63 ++ L GPGG+GKT+ G LL L F+DLD F GDIS FI+ GY YA+ N+ Sbjct: 1 MVRLVGPGGSGKTTTGALLAARLGVSFVDLDRCFSERVGDISEFIKEHGYHNYARENIEN 60 Query: 64 YESIVSIGNAPVVLALSSGFITYPADVAEGYLGLRHRIEHNPLSVLLLPSFELEECVEII 123 Y ++ N P V+ALSSGF+TY + Y +R +E P + LLPSF+ E CV Sbjct: 61 YCWLLLQENRPGVMALSSGFMTYEPNAHPQYSRVRSEVELCPNTFALLPSFDREVCVFET 120 Query: 124 VSRQMGRHYLNGNSHREEEKIRQRFPAFMS 153 V RQ+ R + S +EE IR RF +M+ Sbjct: 121 VRRQIARPFARSGS-KEEVTIRARFEVYMA 149