BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.5574.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003811318.1| hypothetical protein HDN1F_20900 [gamma prot...    82   2e-14
ref|YP_003810832.1| hypothetical protein HDN1F_15970 [gamma prot...    78   4e-13
ref|ZP_08568683.1| hypothetical protein Rhein_0035 [Rheinheimera...    77   6e-13
gb|AAK73305.1| Ypar20 [Pseudomonas alcaligenes]                        75   3e-12

>ref|YP_003811318.1| hypothetical protein HDN1F_20900 [gamma proteobacterium HdN1]
 emb|CBL45673.1| Hypothetical protein HDN1F_20900 [gamma proteobacterium HdN1]
          Length = 138

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 78/133 (58%), Gaps = 4/133 (3%)

Query: 12  QYVISLRIWHPDMPHEEISRTMGRTPNRSWTVGSPRFSIHGKPLGGAYDFSYWTERLTKK 71
           ++V+SLRI HP   H  I ++MG TP  S++VGSPR +  G+PL G Y  SY +  L +K
Sbjct: 5   EFVVSLRIKHPTHTHHSIVQSMGMTPKFSYSVGSPRATPKGRPLEGVYKNSYCSFTLLEK 64

Query: 72  TVLSDTIWVEEEIARQVEAFSQQALFFRKVRAEGGRAELFVGLFSDFNIVVELEPALMGR 131
               D +   ++I   +E+  +   +FR + +EGG+ ELFVG+F+D  +   L    M  
Sbjct: 65  QG-GDFVDGIKKIFVLLESHKE---YFRLLTSEGGKTELFVGVFADGTVGFSLGVEEMRA 120

Query: 132 LAEASLGICLDYY 144
           LA+ SL + ++ Y
Sbjct: 121 LADLSLELSVEVY 133


>ref|YP_003810832.1| hypothetical protein HDN1F_15970 [gamma proteobacterium HdN1]
 emb|CBL45180.1| Hypothetical protein HDN1F_15970 [gamma proteobacterium HdN1]
          Length = 144

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 12  QYVISLRIWHPDMPHEEISRTMGRTPNRSWTVGSPRFSIHGKPLGGAYDFSYWTERLTKK 71
           ++V+SLRI HP   H  I +++G  P  S++VGSPR +  G+PL G Y  SY +  L +K
Sbjct: 5   EFVVSLRIKHPTHTHHSIIKSIGMVPKFSYSVGSPRATPKGRPLEGVYKHSYCSFTLLEK 64

Query: 72  TVLSDTIWVEEEIARQVEAFSQQALFFRKVRAEGGRAELFVGLFSDFNIVVELEPALMGR 131
                  +  + I +          +FR +  EGG+AELFVG+F+D  +   L    M  
Sbjct: 65  ----QEGYFVDGIKKMFVFLEPHKEYFRLLTCEGGKAELFVGIFADGTVGFGLGVEEMRV 120

Query: 132 LAEASLGICLDYY 144
           L+  SL + ++ Y
Sbjct: 121 LSGLSLELSVEVY 133


>ref|ZP_08568683.1| hypothetical protein Rhein_0035 [Rheinheimera sp. A13L]
 gb|EGM79577.1| hypothetical protein Rhein_0035 [Rheinheimera sp. A13L]
          Length = 134

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 71/135 (52%), Gaps = 8/135 (5%)

Query: 12  QYVISLRIWHPDMPHEEISRTMGRTPNRSWTVGSPRFSIHGKPLGGAYDFSYWTERL--T 69
           +Y ISLRI HP +   EI+ T+G  P  S++VG PR +  G  L G Y  +Y    +  T
Sbjct: 5   EYTISLRIEHPSLTCNEITETIGLYPKFSYSVGEPRRTPRGDTLEGFYKETYCCFDVIPT 64

Query: 70  KKTVLSDTIWVEEEIARQVEAFSQQALFFRKVRAEGGRAELFVGLFSDFNIVVELEPALM 129
           K    +D I   E+I  Q+   +    +F  + AEGGR E+FVG+FSD  +   L    M
Sbjct: 65  KTGDFTDDI---EQIVTQLSGLTS---YFANLTAEGGRVEIFVGIFSDETVGFTLTTKDM 118

Query: 130 GRLAEASLGICLDYY 144
             LA  SL + ++ Y
Sbjct: 119 IALANLSLELSVEIY 133


>gb|AAK73305.1| Ypar20 [Pseudomonas alcaligenes]
          Length = 141

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 11  YQYVISLRIWHPDMPHEEISRTMGRTPNRSWTVGSPRFSIHGKPLGGAYDFSYWTERLTK 70
           Y ++ SLR+ HP +  E +++ +G  P RSW  G  R +  G PL G Y    W+    +
Sbjct: 4   YSHIFSLRVAHPSLDPELVTQVLGLKPTRSWRAGKRRQTPKGAPLQGVYSEGCWSSNPFE 63

Query: 71  KTVLSDT-IWVEEEIARQVEAFSQQALFFRKVRAEGGRAELFVGLFSDFNIVVELEPALM 129
            +    T   +E+ +   V+       F + +  +GGR  ++V   S  N  VEL P  +
Sbjct: 64  YSWRESTDTSIEDALEELVKYLEPHTAFLKGIGNDGGRVTIWVSSQSTRNYAVELSPNFL 123

Query: 130 GRLAEASLGICLDYYP 145
           GRLA     I  D YP
Sbjct: 124 GRLAALGASIVYDVYP 139