BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5570.p (509 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777718.1| sporulation protein [Herbaspirillum seropedi... 1008 0.0 ref|YP_004754793.1| stage V sporulation protein R [Collimonas fu... 884 0.0 ref|ZP_06845848.1| SpoVR family protein [Burkholderia sp. Ch1-1]... 836 0.0 ref|YP_004228022.1| SpoVR family protein [Burkholderia sp. CCGE1... 833 0.0 ref|YP_003907105.1| SpoVR family protein [Burkholderia sp. CCGE1... 832 0.0 >ref|YP_003777718.1| sporulation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65810.1| sporulation protein [Herbaspirillum seropedicae SmR1] Length = 509 Score = 1008 bits (2607), Expect = 0.0, Method: Composition-based stats. Identities = 499/509 (98%), Positives = 505/509 (99%) Query: 1 MNSRFKHDPLPCPSDWSFDLIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG 60 MNSRFKHDPLPCPSDWSF+LIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG Sbjct: 1 MNSRFKHDPLPCPSDWSFELIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG 60 Query: 61 MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA 120 MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA Sbjct: 61 MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA 120 Query: 121 YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV 180 YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV Sbjct: 121 YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV 180 Query: 181 DRYKRPQRLSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLL 240 DRYKRPQRLSLAQE+A+QREREAY QSQVNELWRTLPAKKE TAA V+ RFPSEPQENLL Sbjct: 181 DRYKRPQRLSLAQEKARQREREAYMQSQVNELWRTLPAKKEMTAAAVEGRFPSEPQENLL 240 Query: 241 YFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLT 300 YFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLT Sbjct: 241 YFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLT 300 Query: 301 DGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTNEDREWFPDIA 360 DGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPT+EDREWFPDIA Sbjct: 301 DGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTDEDREWFPDIA 360 Query: 361 GRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDEARSEIEVSAIHNERGFQY 420 GRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDE+RSEIEVSAIHNERGFQY Sbjct: 361 GRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDESRSEIEVSAIHNERGFQY 420 Query: 421 VRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQF 480 VRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQF Sbjct: 421 VRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQF 480 Query: 481 DVYLESVDDNGYIVQRYECVAENRYALRS 509 DVYLESVDDNGYIVQRYECVAENRYALRS Sbjct: 481 DVYLESVDDNGYIVQRYECVAENRYALRS 509 >ref|YP_004754793.1| stage V sporulation protein R [Collimonas fungivorans Ter331] gb|AEK63970.1| Stage V sporulation protein R [Collimonas fungivorans Ter331] Length = 509 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 423/508 (83%), Positives = 469/508 (92%) Query: 1 MNSRFKHDPLPCPSDWSFDLIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG 60 MN R H PLPCPSDW+FDLIE YN+EIARVA Y+LDIYPIQLEII+AEQMMDAYAS G Sbjct: 1 MNDRLIHQPLPCPSDWTFDLIELYNDEIARVAANYKLDIYPIQLEIITAEQMMDAYASAG 60 Query: 61 MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA 120 MPVNYRHWS+GKHF++TERDYKRGQMGLAYEIVINS+PCIAYLMEENTMTMQALV+AHAA Sbjct: 61 MPVNYRHWSFGKHFLMTERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAA 120 Query: 121 YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV 180 YGHNSFFKGNYLFQLWTDA AIIDYLVYA+ YIAECEER+GF +VEELLDSCHALM+YGV Sbjct: 121 YGHNSFFKGNYLFQLWTDAHAIIDYLVYAKAYIAECEERYGFSKVEELLDSCHALMHYGV 180 Query: 181 DRYKRPQRLSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLL 240 DRYKRPQ+LSL +E+AQ+RER Y QSQVNELWRTLP KK TA QV+ RFP E QENLL Sbjct: 181 DRYKRPQKLSLEKEQAQRRERAEYMQSQVNELWRTLPEKKAETAEQVEGRFPPETQENLL 240 Query: 241 YFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLT 300 YFAEKN+PLLE WEREVIRIVRKV QYFYPQRQTQVMNEGWATFWHYT+LNTLYD+G+LT Sbjct: 241 YFAEKNSPLLESWEREVIRIVRKVAQYFYPQRQTQVMNEGWATFWHYTILNTLYDEGKLT 300 Query: 301 DGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTNEDREWFPDIA 360 DGFMMEFLHSHSNVV+QPP+TK YY+G+NPYALGF MMSDIRRICE PT+EDR+WFP++A Sbjct: 301 DGFMMEFLHSHSNVVYQPPVTKSYYSGMNPYALGFGMMSDIRRICEKPTDEDRQWFPELA 360 Query: 361 GRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDEARSEIEVSAIHNERGFQY 420 G WL+TL Y MRN+KDESF+AQYLSPKL+RDMR+FAVLDDE RSE+EVSAIHN+ G+QY Sbjct: 361 GTPWLETLHYAMRNFKDESFVAQYLSPKLIRDMRLFAVLDDENRSELEVSAIHNDAGYQY 420 Query: 421 VRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQF 480 VRQALSRQYDINHREPNIQVWSVNTRG+RSLTLRHFRSD R L D T+E+LRHMARLWQF Sbjct: 421 VRQALSRQYDINHREPNIQVWSVNTRGDRSLTLRHFRSDSRPLADGTDEILRHMARLWQF 480 Query: 481 DVYLESVDDNGYIVQRYECVAENRYALR 508 DVYLESVDD+G ++QRYECV+EN+Y LR Sbjct: 481 DVYLESVDDSGNVLQRYECVSENKYVLR 508 >ref|ZP_06845848.1| SpoVR family protein [Burkholderia sp. Ch1-1] gb|EFG66508.1| SpoVR family protein [Burkholderia sp. Ch1-1] Length = 576 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 395/491 (80%), Positives = 447/491 (91%) Query: 9 PLPCPSDWSFDLIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHGMPVNYRHW 68 PLPCPSDW+F+LIE Y+ IARVA+ YELD+YPIQLE+ISAEQMMDAYAS GMPVNYRHW Sbjct: 77 PLPCPSDWTFELIEEYDSHIARVAEQYELDVYPIQLELISAEQMMDAYASVGMPVNYRHW 136 Query: 69 SYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAAYGHNSFFK 128 S+GKHF+ TE+ Y+RGQMGLAYEIVINS+PCIAYLMEENTMTMQALVIAHAAYGHNSFFK Sbjct: 137 SFGKHFLSTEKSYRRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVIAHAAYGHNSFFK 196 Query: 129 GNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGVDRYKRPQR 188 GNYLF+LWTDA AIIDYLVYA+NYIAECEER G +RVEELLDSCHALMNYGVDRYKRPQ+ Sbjct: 197 GNYLFRLWTDAHAIIDYLVYAKNYIAECEERFGLDRVEELLDSCHALMNYGVDRYKRPQK 256 Query: 189 LSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEKNAP 248 LSL +E A +REREAY QSQVNELWRTLP + +++ER+P EPQENLLYFAEKNAP Sbjct: 257 LSLEKEFAARREREAYLQSQVNELWRTLPTRHTPLPEEIEERYPPEPQENLLYFAEKNAP 316 Query: 249 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLTDGFMMEFL 308 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNT+Y+QG+L DGFMMEFL Sbjct: 317 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYNQGKLEDGFMMEFL 376 Query: 309 HSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTNEDREWFPDIAGRNWLDTL 368 HSHSNVV+QPP+TKPYY+GINPYALGFSMMSDIRRICE PT EDR+WFP++AG WL + Sbjct: 377 HSHSNVVYQPPVTKPYYSGINPYALGFSMMSDIRRICETPTEEDRKWFPELAGSPWLPAM 436 Query: 369 QYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDEARSEIEVSAIHNERGFQYVRQALSRQ 428 Y MRN+KDESF+AQYLSP L+R+MR+F+VLDD+ R +EVSAIH++ G+QYVRQALSRQ Sbjct: 437 HYAMRNFKDESFVAQYLSPHLIREMRLFSVLDDDMRDALEVSAIHDDSGYQYVRQALSRQ 496 Query: 429 YDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLESVD 488 YD++HREPNIQVWSVNTRG+RSLTLRHF SD R L ++EVL+HMARLWQFDVYLESVD Sbjct: 497 YDMHHREPNIQVWSVNTRGDRSLTLRHFMSDNRHLSGDSDEVLKHMARLWQFDVYLESVD 556 Query: 489 DNGYIVQRYEC 499 +NG + +RYEC Sbjct: 557 ENGTVRKRYEC 567 >ref|YP_004228022.1| SpoVR family protein [Burkholderia sp. CCGE1001] gb|ADX54962.1| SpoVR family protein [Burkholderia sp. CCGE1001] Length = 571 Score = 833 bits (2153), Expect = 0.0, Method: Composition-based stats. Identities = 395/491 (80%), Positives = 449/491 (91%) Query: 9 PLPCPSDWSFDLIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHGMPVNYRHW 68 PLPCPSDW+F+LIE Y+ IARVA+ YELD+YPIQLE+ISAEQMMDAYAS GMPVNYRHW Sbjct: 72 PLPCPSDWTFELIEEYDSHIARVAEQYELDVYPIQLELISAEQMMDAYASVGMPVNYRHW 131 Query: 69 SYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAAYGHNSFFK 128 S+GKHF+ TE+ Y+RGQMGLAYEIVINS+PCIAYLMEENTMTMQALVIAHAAYGHNSFFK Sbjct: 132 SFGKHFLATEKSYRRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVIAHAAYGHNSFFK 191 Query: 129 GNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGVDRYKRPQR 188 GNYLF+LWTDA AIIDYLVYA+NYIAECEER G +RVEELLDSCHALMNYGVDRYKRPQ+ Sbjct: 192 GNYLFRLWTDAHAIIDYLVYAKNYIAECEERFGLDRVEELLDSCHALMNYGVDRYKRPQK 251 Query: 189 LSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEKNAP 248 LSL +E A +REREAY QSQVNELWRTLP + +++ER+P EPQENLLYFAEKNAP Sbjct: 252 LSLEKEFAARREREAYLQSQVNELWRTLPTRHTPLPEEIEERYPPEPQENLLYFAEKNAP 311 Query: 249 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLTDGFMMEFL 308 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNT+Y+QG+L DGFMMEFL Sbjct: 312 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYNQGKLEDGFMMEFL 371 Query: 309 HSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTNEDREWFPDIAGRNWLDTL 368 HSHSNVV+QPP+TKPYY+GINPYALGFSMMSDIRRICENPT+EDR+WFP++AG WL + Sbjct: 372 HSHSNVVYQPPVTKPYYSGINPYALGFSMMSDIRRICENPTDEDRKWFPELAGSPWLPAM 431 Query: 369 QYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDEARSEIEVSAIHNERGFQYVRQALSRQ 428 Y MRN+KDESF+AQYLSP L+R+MR+F+VLDD+ R +EVSAIH++ G+QYVRQALSRQ Sbjct: 432 HYAMRNFKDESFVAQYLSPHLIREMRLFSVLDDDMRDALEVSAIHDDSGYQYVRQALSRQ 491 Query: 429 YDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLESVD 488 YD++HREPNIQVW+VNTRG+RSLTLRHF SD R L ++EVL+HMARLWQFDVYLESVD Sbjct: 492 YDMHHREPNIQVWAVNTRGDRSLTLRHFMSDNRHLSSDSDEVLKHMARLWQFDVYLESVD 551 Query: 489 DNGYIVQRYEC 499 +NG + +RYEC Sbjct: 552 ENGTVRKRYEC 562 >ref|YP_003907105.1| SpoVR family protein [Burkholderia sp. CCGE1003] gb|ADN57814.1| SpoVR family protein [Burkholderia sp. CCGE1003] Length = 571 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 396/491 (80%), Positives = 449/491 (91%) Query: 9 PLPCPSDWSFDLIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHGMPVNYRHW 68 PLPCPSDW+F+LIE Y+ IARVA+ YELD+YPIQLE+ISAEQMMDAYAS GMPVNYRHW Sbjct: 72 PLPCPSDWTFELIEEYDSHIARVAEQYELDVYPIQLELISAEQMMDAYASVGMPVNYRHW 131 Query: 69 SYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAAYGHNSFFK 128 S+GKHF+ TE+ Y+RGQMGLAYEIVINS+PCIAYLMEENTMTMQALVIAHAAYGHNSFFK Sbjct: 132 SFGKHFLATEKSYRRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVIAHAAYGHNSFFK 191 Query: 129 GNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGVDRYKRPQR 188 GNYLF+LWTDA AIIDYLVYA+NYIAECEER G +RVEELLDSCHALMNYGVDRYKRPQ+ Sbjct: 192 GNYLFRLWTDAHAIIDYLVYAKNYIAECEERFGLDRVEELLDSCHALMNYGVDRYKRPQK 251 Query: 189 LSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEKNAP 248 LSL +E A +REREAY QSQVNELWRTLP + +++ER+P EPQENLLYFAEKNAP Sbjct: 252 LSLEKEFAARREREAYLQSQVNELWRTLPTRHTPLPEEIEERYPPEPQENLLYFAEKNAP 311 Query: 249 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLTDGFMMEFL 308 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNT+Y+QG+L DGFMMEFL Sbjct: 312 LLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYNQGKLEDGFMMEFL 371 Query: 309 HSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTNEDREWFPDIAGRNWLDTL 368 HSHSNVV+QPP+TKPYY+GINPYALGFSMMSDIRRICENPT+EDR+WFP++AG WL + Sbjct: 372 HSHSNVVYQPPVTKPYYSGINPYALGFSMMSDIRRICENPTDEDRKWFPELAGSPWLPAM 431 Query: 369 QYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDEARSEIEVSAIHNERGFQYVRQALSRQ 428 Y MRN+KDESF+AQYLSP L+R+MR+F+VLDD+ R +EVSAIH++ G+QYVRQALSRQ Sbjct: 432 HYAMRNFKDESFVAQYLSPHLIREMRLFSVLDDDMRDALEVSAIHDDSGYQYVRQALSRQ 491 Query: 429 YDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLESVD 488 YD++HREPNIQVWSVNTRG+RSLTLRHF SD R L ++EVL+HMARLWQFDVYLESVD Sbjct: 492 YDMHHREPNIQVWSVNTRGDRSLTLRHFMSDNRHLSSDSDEVLKHMARLWQFDVYLESVD 551 Query: 489 DNGYIVQRYEC 499 +NG + +RYEC Sbjct: 552 ENGTVRKRYEC 562