BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5567.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777800.1| AsnC family transcription regulator protein ... 233 9e-60 ref|YP_001355132.1| auxin efflux carrier [Janthinobacterium sp. ... 213 9e-54 ref|YP_001101426.1| high-affinity branched-chain amino acid tran... 213 1e-53 ref|NP_879504.1| transcription regulator AsnC [Bordetella pertus... 199 1e-49 ref|NP_886346.1| transcription regulator AsnC [Bordetella parape... 198 2e-49 >ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65892.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 233 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 131/152 (86%), Positives = 142/152 (93%) Query: 5 LDLDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQ 64 +LDDLDRRIL+ALQ+DASQTNQELAA+VHASPPTCLRRVKRLV+ GVIARQVALLD + Sbjct: 3 FELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQK 62 Query: 65 LASTLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHA 124 +A+ LTA+VEITLDRQGEEEQQAFEALVA E AVQQCYRVSPGPDFVLVVLVRDM +YHA Sbjct: 63 VAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMSSYHA 122 Query: 125 LAHRLFASQRNVRNVRSYFSIHRSKFETRIAV 156 LAHRLFASQRNVRNVRSYFSIHRSKFET I + Sbjct: 123 LAHRLFASQRNVRNVRSYFSIHRSKFETAIPI 154 >ref|YP_001355132.1| auxin efflux carrier [Janthinobacterium sp. Marseille] gb|ABR90285.1| auxin efflux carrier [Janthinobacterium sp. Marseille] Length = 157 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 116/152 (76%), Positives = 132/152 (86%) Query: 5 LDLDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQ 64 LDLD+LDRRIL ALQ DASQTN +LAA VHASPPTCLRRVKRL+DAGVI RQVA++ P Sbjct: 6 LDLDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQM 65 Query: 65 LASTLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHA 124 + + LT++VEITLD+Q +E+Q FEALVA E+AV QCYRVSPGPDFVLVV V DMPAYH Sbjct: 66 VGAGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHV 125 Query: 125 LAHRLFASQRNVRNVRSYFSIHRSKFETRIAV 156 LAHRLFA+ NVRNVRS+FSI+RSKFETRIAV Sbjct: 126 LAHRLFATHANVRNVRSFFSINRSKFETRIAV 157 >ref|YP_001101426.1| high-affinity branched-chain amino acid transport system; global regulatory protein, Leu responsive; site-specific blocking of 549 methylation [Herminiimonas arsenicoxydans] emb|CAL63305.1| Transcriptional regulator, AsnC family [Herminiimonas arsenicoxydans] Length = 157 Score = 213 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 112/150 (74%), Positives = 127/150 (84%) Query: 7 LDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQLA 66 LD+LDRRIL ALQ D+SQTN +LA VHASPPTCLRRVKRLVDAGVI RQVA++ P ++ Sbjct: 8 LDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQKIG 67 Query: 67 STLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126 + LTA+VEITLD Q E Q FE +VAGE+AV QCYRVSPGPDFVLV+ V DMPAY+AL Sbjct: 68 AGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYNALV 127 Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETRIAV 156 HRLFAS NVRNV+S+FSIHRSKFETRIAV Sbjct: 128 HRLFASHANVRNVKSFFSIHRSKFETRIAV 157 >ref|NP_879504.1| transcription regulator AsnC [Bordetella pertussis Tohama I] emb|CAE44993.1| AsnC-family transcriptional regulator [Bordetella pertussis Tohama I] gb|AEE66124.1| transcription regulator AsnC [Bordetella pertussis CS] Length = 162 Score = 199 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 104/150 (69%), Positives = 124/150 (82%) Query: 7 LDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQLA 66 LDDLDRRIL +Q D + TNQELAA+VHASPPTCLRRV+RLVD GVI +QVA++ PA++ Sbjct: 11 LDDLDRRILDQMQRDCTLTNQELAARVHASPPTCLRRVRRLVDEGVIEKQVAIVAPAKVG 70 Query: 67 STLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126 STLTA+VEITLD Q E FEA + E AV QCYRVSPGPDFV++V V DMPAYHALA Sbjct: 71 STLTAIVEITLDVQAAERLAEFEASLLDEPAVLQCYRVSPGPDFVVIVQVADMPAYHALA 130 Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETRIAV 156 HR+F +Q NVRNVR++FS+HR+KFETRI + Sbjct: 131 HRVFTAQANVRNVRTFFSVHRAKFETRIGI 160 >ref|NP_886346.1| transcription regulator AsnC [Bordetella parapertussis 12822] emb|CAE39494.1| AsnC-family transcriptional regulator [Bordetella parapertussis] Length = 162 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 104/150 (69%), Positives = 124/150 (82%) Query: 7 LDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQLA 66 LDDLDRRIL +Q D + TNQELAA+VHASPPTCLRRV+RLVD GVI +QVA++ PA++ Sbjct: 11 LDDLDRRILDQMQRDCALTNQELAARVHASPPTCLRRVRRLVDEGVIEKQVAIVAPAKVG 70 Query: 67 STLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126 STLTA+VEITLD Q E FEA + E AV QCYRVSPGPDFV++V V DMPAYHALA Sbjct: 71 STLTAIVEITLDVQAAERLAEFEASLLDEPAVLQCYRVSPGPDFVVIVQVADMPAYHALA 130 Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETRIAV 156 HR+F +Q NVRNVR++FS+HR+KFETRI + Sbjct: 131 HRVFTAQANVRNVRTFFSVHRAKFETRIGI 160