BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5563.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [Herbaspirillum ... 612 e-173 ref|YP_001951029.1| CDP-glucose 4,6-dehydratase [Geobacter lovle... 421 e-116 ref|YP_150080.1| CDP-glucose 4,6-dehydratase [Salmonella enteric... 416 e-114 ref|YP_003140828.1| CDP-glucose 4,6-dehydratase [Capnocytophaga ... 416 e-114 ref|NP_456640.1| CDP-glucose 4,6-dehydratase [Salmonella enteric... 415 e-114 >ref|YP_003777783.1| CDP-glucose-4,6-dehydratase [Herbaspirillum seropedicae SmR1] gb|ACO81755.1| RfbG [Herbaspirillum seropedicae SmR1] gb|ADJ65875.1| CDP-glucose-4,6-dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 357 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 297/357 (83%), Positives = 325/357 (91%), Gaps = 1/357 (0%) Query: 1 MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYALPAPTNPSLFHLARLQNCVQTT 60 MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGY+LPAPT+PSLFHLARL NCVQTT Sbjct: 1 MANFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYSLPAPTSPSLFHLARLHNCVQTT 60 Query: 61 IGDVRDPQHLAETLAAVQPDVVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVRHTP 120 GDVRDP+HLAET+AAVQPDVVFHLA QP + SY TP+DT+ATNVMGT HLLEAVR TP Sbjct: 61 TGDVRDPKHLAETMAAVQPDVVFHLAGQPQIEHSYLTPLDTFATNVMGTAHLLEAVRSTP 120 Query: 121 SVRSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSFFASNPDN 180 SVR+VVVV+S+KCYENREWLWGYREDDPMGGHDP+SSSKGAAELVT+AYRRSFF+++PD+ Sbjct: 121 SVRAVVVVSSNKCYENREWLWGYREDDPMGGHDPFSSSKGAAELVTAAYRRSFFSADPDS 180 Query: 181 TVGIASVRAGNVIGGGDFAADRLIPDFVRALEKEEPVVIRNPHAVRPWQFVLEPLSGYLQ 240 VG+ASVR GNVIGGGDFAADRLIPDF+RALE ++PV IR PHAVRPWQFVLEPLSGYLQ Sbjct: 181 PVGVASVRTGNVIGGGDFAADRLIPDFIRALETDQPVTIRQPHAVRPWQFVLEPLSGYLQ 240 Query: 241 IAQLLYEQGGAFSEGWNFGPADTDLQTVSQLCATFNHSLQKNDAGQVEVRLDTQANGPHE 300 I ++LYE G +++E WNFGP DTDLQTVSQLCATFNHSLQKND VEVRL+ QA Sbjct: 241 IGKMLYEHGASYAEAWNFGPTDTDLQTVSQLCATFNHSLQKNDVEPVEVRLE-QAGATLS 299 Query: 301 AALLRLDISKVRQRLDWIPKMELYTALELTAQWYAGYLNNEDLRTLSENQIAFYQSL 357 A+LRLD SK RQRLDWIP+MELYTALELTAQWYAGYLNNEDLR LSENQIAFYQSL Sbjct: 300 EAVLRLDTSKARQRLDWIPRMELYTALELTAQWYAGYLNNEDLRALSENQIAFYQSL 356 >ref|YP_001951029.1| CDP-glucose 4,6-dehydratase [Geobacter lovleyi SZ] gb|ACD94509.1| CDP-glucose 4,6-dehydratase [Geobacter lovleyi SZ] Length = 357 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 215/362 (59%), Positives = 259/362 (71%), Gaps = 18/362 (4%) Query: 4 FWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYALPAPTNPSLFHLARLQNC---VQTT 60 FW++K+VF+TGHTGFKGSWLTLWL +GA+V GYAL PT PSLF+L L + + + Sbjct: 3 FWQNKKVFVTGHTGFKGSWLTLWLLKLGAEVHGYALEPPTEPSLFNLLGLNSPSPQLSSQ 62 Query: 61 IGDVRDPQHLAETLAAVQPDVVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVRHTP 120 I D+RD LA + QP++V H+AAQPLVRDSY PVDTYA N+MGTV++LEA+RH P Sbjct: 63 IADIRDSSALATAIQQAQPEIVIHMAAQPLVRDSYLIPVDTYAINIMGTVNMLEAIRHCP 122 Query: 121 SVRSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSFFASN--P 178 SVR+VV VT+DKCYENREW+WGYRED+PMGG DPYSSSKG +ELVT+AYR+S+F S Sbjct: 123 SVRAVVNVTTDKCYENREWVWGYREDEPMGGFDPYSSSKGCSELVTAAYRQSYFNSRQPT 182 Query: 179 DNTVGIASVRAGNVIGGGDFAADRLIPDFVRALEKEEPVVIRNPHAVRPWQFVLEPLSGY 238 + V +AS RAGNVIGGGD+AADRL+PD VRAL +EPV IRNP AVRPWQ VLEPLSGY Sbjct: 183 QHGVALASARAGNVIGGGDWAADRLVPDIVRALLNKEPVSIRNPLAVRPWQHVLEPLSGY 242 Query: 239 LQIAQLLYEQGGAFSEGWNFGPADTDLQTVS----QLCATFNHSLQKNDAGQVEVRLDTQ 294 L +A+ LYE G AF+EGWNFGPAD D + V+ LC L N A V D Sbjct: 243 LCLARHLYEHGTAFAEGWNFGPADEDAKPVAWIVDHLC-----KLWGNSASYTIVSGDH- 296 Query: 295 ANGPHEAALLRLDISKVRQRLDWIPKMELYTALELTAQWYAGYLNNEDLRTLSENQIAFY 354 PHEA L+LD SK + RL W P+ L TALE W Y E +RT+ NQIA Y Sbjct: 297 ---PHEAQYLKLDCSKAKMRLGWKPRWNLETALEQVVTWTKAYSKKESIRTICLNQIASY 353 Query: 355 QS 356 ++ Sbjct: 354 EA 355 >ref|YP_150080.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gb|AAV76768.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 359 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 201/358 (56%), Positives = 263/358 (73%), Gaps = 11/358 (3%) Query: 3 NFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYALPAPTNPSLFHLARLQNCVQTTIG 62 NFW+ KRVF+TGHTGFKGSWL+LWL MGA V GYAL APT PSLF + RL + +++ IG Sbjct: 5 NFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIG 64 Query: 63 DVRDPQHLAETLAAVQPDVVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVRHTPSV 122 D+RD + L ++A +P++VFH+AAQPLVR SY P++TY+TNVMGTVHLLEAV+ ++ Sbjct: 65 DIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIETYSTNVMGTVHLLEAVKQVDNI 124 Query: 123 RSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSFFASNPDN-- 180 ++VV +TSDKCY+NREW+WGYRE++PMGG+DPYS+SKG AELV SA+R SFF NP N Sbjct: 125 KAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFF--NPANYE 182 Query: 181 --TVGIASVRAGNVIGGGDFAADRLIPDFVRALEKEEPVVIRNPHAVRPWQFVLEPLSGY 238 VG+ASVRAGNVIGGGD+A DRLIPD +R+ E + V+IRNP+++RPWQ VLEPLSGY Sbjct: 183 QHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNPYSIRPWQHVLEPLSGY 242 Query: 239 LQIAQLLYEQGGAFSEGWNFGPADTDLQTVSQLCATFNHSLQKNDAGQVEVRLDTQANGP 298 + +AQ LY +G FSEGWNFGP D D +TV + +L +DA + LD + N P Sbjct: 243 IVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMV-TLWGDDASWL---LDGE-NHP 297 Query: 299 HEAALLRLDISKVRQRLDWIPKMELYTALELTAQWYAGYLNNEDLRTLSENQIAFYQS 356 HEA L+LD SK +L W P+ L L +W+ ++ ED+ S+++I+ Y S Sbjct: 298 HEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKAWIRGEDMLICSKHEISDYMS 355 >ref|YP_003140828.1| CDP-glucose 4,6-dehydratase [Capnocytophaga ochracea DSM 7271] gb|ACU92267.1| CDP-glucose 4,6-dehydratase [Capnocytophaga ochracea DSM 7271] Length = 356 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 198/351 (56%), Positives = 255/351 (72%), Gaps = 7/351 (1%) Query: 4 FWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYALPAPTNPSLFHLARLQNCVQTTIGD 63 FW+ KRVF+TGHTGFKGSWL+LWL LMGA+V G++L PT P+LF +A++ + +QT IGD Sbjct: 10 FWKGKRVFVTGHTGFKGSWLSLWLQLMGAEVKGFSLTPPTQPALFDVAKVGDNMQTEIGD 69 Query: 64 VRDPQHLAETLAAVQPDVVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVRHTPSVR 123 +R+ Q L++++ A PDV+ HLAAQPLVR SY PVDTY+TNVMGTV++LE RHTP+++ Sbjct: 70 IRNLQQLSQSIRAFNPDVLLHLAAQPLVRLSYKEPVDTYSTNVMGTVNVLEVARHTPNLK 129 Query: 124 SVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSFFASNPDNTVG 183 SVVV+T+DKCYEN EW WGYRE++PMGG+DPYS+SKG AELV SAYRRSFF + D+T Sbjct: 130 SVVVITTDKCYENHEWEWGYRENEPMGGYDPYSNSKGCAELVVSAYRRSFFYT--DDTAA 187 Query: 184 IASVRAGNVIGGGDFAADRLIPDFVRALEKEEPVVIRNPHAVRPWQFVLEPLSGYLQIAQ 243 IAS RAGNVIGGGD+A DRLIPD +RA EK++PV+IRNP + RPWQ VLEPLSGYL +A+ Sbjct: 188 IASARAGNVIGGGDWAEDRLIPDILRAFEKQQPVIIRNPLSTRPWQHVLEPLSGYLVLAE 247 Query: 244 LLYEQGGAFSEGWNFGPADTDLQTVSQLCATFNHSLQKNDAGQVEVRLDTQANGPHEAAL 303 LY +G F+EGWNFGP D D Q+V + + + + ++ PHEA Sbjct: 248 RLYNEGNVFAEGWNFGPKDDDCQSVQWILEKMVQFWGEGARYEWD-----KSEQPHEANF 302 Query: 304 LRLDISKVRQRLDWIPKMELYTALELTAQWYAGYLNNEDLRTLSENQIAFY 354 L+LD SK RL W P+ L LE W+ +L D++T +I Y Sbjct: 303 LKLDCSKAATRLKWHPQWRLADTLEKIIHWHRSWLQGADMQTRCLYEIKGY 353 >ref|NP_456640.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] ref|NP_804623.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] ref|ZP_03345709.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] ref|ZP_03351352.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] ref|ZP_03358301.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] ref|ZP_03368158.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] ref|ZP_03373763.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] ref|ZP_03376967.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. J185] ref|ZP_03382480.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. M223] pir||AH0766 CDPglucose 4,6-dehydratase (EC 4.2.1.45) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) emb|CAD02454.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO68472.1| CDP-glucose 4,6-dehydratase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 359 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 201/358 (56%), Positives = 262/358 (73%), Gaps = 11/358 (3%) Query: 3 NFWRDKRVFITGHTGFKGSWLTLWLHLMGAKVSGYALPAPTNPSLFHLARLQNCVQTTIG 62 NFW+ KRVF+TGHTGFKGSWL+LWL MGA V GYAL APT PSLF + RL + +++ IG Sbjct: 5 NFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIG 64 Query: 63 DVRDPQHLAETLAAVQPDVVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVRHTPSV 122 D+RD + L ++A +P++VFH+AAQPLVR SY P++TY+TNVMGTVHLLEAV+ ++ Sbjct: 65 DIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIETYSTNVMGTVHLLEAVKQVGNI 124 Query: 123 RSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSFFASNPDN-- 180 ++VV +TSDKCY+NREW+WGYRE++PMGG+DPYS+SKG AELV SA+R SFF NP N Sbjct: 125 KAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFF--NPANYE 182 Query: 181 --TVGIASVRAGNVIGGGDFAADRLIPDFVRALEKEEPVVIRNPHAVRPWQFVLEPLSGY 238 VG+ASVRAGNVIGGGD+A DRLIPD +R+ E + V+IRNP+++RPWQ VLEPLSGY Sbjct: 183 QHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNPYSIRPWQHVLEPLSGY 242 Query: 239 LQIAQLLYEQGGAFSEGWNFGPADTDLQTVSQLCATFNHSLQKNDAGQVEVRLDTQANGP 298 + +AQ LY +G FSEGWNFGP D D +TV + +L +DA + LD + N P Sbjct: 243 IVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVDKMV-TLWGDDASWL---LDGE-NHP 297 Query: 299 HEAALLRLDISKVRQRLDWIPKMELYTALELTAQWYAGYLNNEDLRTLSENQIAFYQS 356 HEA L+LD SK +L W P+ L L +W+ ++ ED+ S+ +I+ Y S Sbjct: 298 HEAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWHKAWIRGEDMLICSKREISDYMS 355