BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5561.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777782.1| cell cycle control ATPase [Herbaspirillum se... 593 e-167 ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [G... 402 e-110 ref|YP_004566281.1| TtcA [Vibrio anguillarum 775] >gi|335341956|... 397 e-108 ref|ZP_06155375.1| tRNA(Cytosine32)-2-thiocytidine synthetase [P... 395 e-108 ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [V... 395 e-108 >ref|YP_003777782.1| cell cycle control ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ65874.1| ATPase of the PP-loop superfamily implicated in cell cycle control protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 287/320 (89%), Positives = 297/320 (92%) Query: 38 MNDIAAAVQLSDLADLDASSAQAQEERGQPEVTARGSRRFELLEKNIRRLTGRAIADFDM 97 MND+AAAV LSD D + GQ EVTA GSRRFELL+KNIRRLTGRAIADFDM Sbjct: 1 MNDMAAAVPLSDPIQADELAQAGSGPAGQSEVTAPGSRRFELLQKNIRRLTGRAIADFDM 60 Query: 98 IRDGDVIMACMSGGADSYTMLDTLRYLQTVAPVKFEIIAVNLDQKQPGFPEHILPEYFER 157 IRDGDVIMACMSGGADSYTMLDTLRYLQ+VAPVKFEIIAVNLDQKQPGFPEHILPEYFER Sbjct: 61 IRDGDVIMACMSGGADSYTMLDTLRYLQSVAPVKFEIIAVNLDQKQPGFPEHILPEYFER 120 Query: 158 IGVPYRIVEEDTYSIVKEKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALGHHRDDIL 217 IGV YRIVEEDTYSIVK+KIAPGKTTCSLCSRLRRGILYRVAKELGATKIALGHHRDDIL Sbjct: 121 IGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALGHHRDDIL 180 Query: 218 HTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAMEFPIIPCNLCGS 277 HTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAM+FPIIPCNLCGS Sbjct: 181 HTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAMQFPIIPCNLCGS 240 Query: 278 QPNLQRQAMREMLNQWEKTNPLWIKSMFTAMANITPSHMLDRSLFDFTHFTAGAGKEAQG 337 QPNLQRQAMREMLN+WEKTNPLWIKSMFTAM NI PSHMLDRSLFDFTHFT G GKEA G Sbjct: 241 QPNLQRQAMREMLNEWEKTNPLWIKSMFTAMGNIAPSHMLDRSLFDFTHFTPGPGKEASG 300 Query: 338 DTLFDRDDKLDQGQSVINLV 357 DTLFDRDDK++ GQSVINL+ Sbjct: 301 DTLFDRDDKVEDGQSVINLL 320 >ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] gb|EEY70847.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] Length = 308 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 188/281 (66%), Positives = 219/281 (77%) Query: 68 EVTARGSRRFELLEKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQTV 127 E+T L+K IRR G+AIADF+MI DGD IM C+SGG DSYTML+ L+ LQ Sbjct: 5 ELTKAQKYNLNKLQKRIRRNVGQAIADFNMIEDGDRIMVCLSGGKDSYTMLEILQSLQKS 64 Query: 128 APVKFEIIAVNLDQKQPGFPEHILPEYFERIGVPYRIVEEDTYSIVKEKIAPGKTTCSLC 187 AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTYSIVK+KI GKTTCSLC Sbjct: 65 APISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYSIVKDKIPEGKTTCSLC 124 Query: 188 SRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENVVI 247 SRLRRGILYR AKELGATKIALGHHRDD+L T LNMFYGGK+K MPPKL++D+GE+VVI Sbjct: 125 SRLRRGILYRTAKELGATKIALGHHRDDMLETLFLNMFYGGKMKGMPPKLVSDNGEHVVI 184 Query: 248 RPLAYVREPDIKKYAAAMEFPIIPCNLCGSQPNLQRQAMREMLNQWEKTNPLWIKSMFTA 307 RPLAY RE DI++YA A FPIIPCNLCGSQPNLQRQ ++EML W+K P I++MF A Sbjct: 185 RPLAYCREKDIERYAEAAAFPIIPCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRA 244 Query: 308 MANITPSHMLDRSLFDFTHFTAGAGKEAQGDTLFDRDDKLD 348 M N+ PSH+ D LFDF G+G GDT FDR+ D Sbjct: 245 MQNVVPSHLADFELFDFKSINQGSGVINGGDTAFDREQFTD 285 >ref|YP_004566281.1| TtcA [Vibrio anguillarum 775] gb|AEH33239.1| TtcA [Vibrio anguillarum 775] Length = 310 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 188/278 (67%), Positives = 219/278 (78%) Query: 68 EVTARGSRRFELLEKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQTV 127 E T F L+K IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L LQ Sbjct: 7 ERTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMSLQKS 66 Query: 128 APVKFEIIAVNLDQKQPGFPEHILPEYFERIGVPYRIVEEDTYSIVKEKIAPGKTTCSLC 187 APV FE+IAVNLDQKQPGFPEHILP+Y E++GV Y+IVEEDTYSIV++KI GKTTCSLC Sbjct: 67 APVSFELIAVNLDQKQPGFPEHILPQYLEQLGVEYKIVEEDTYSIVQDKIPEGKTTCSLC 126 Query: 188 SRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENVVI 247 SRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGKIK MPPKL++D+GE+VVI Sbjct: 127 SRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKIKGMPPKLVSDNGEHVVI 186 Query: 248 RPLAYVREPDIKKYAAAMEFPIIPCNLCGSQPNLQRQAMREMLNQWEKTNPLWIKSMFTA 307 RPLAY RE DI KYA E+PIIPCNLCGSQPN+QRQ +++MLN W+K P I++MF+A Sbjct: 187 RPLAYCREKDIIKYANMREYPIIPCNLCGSQPNMQRQNIKQMLNGWDKQFPGRIETMFSA 246 Query: 308 MANITPSHMLDRSLFDFTHFTAGAGKEAQGDTLFDRDD 345 M N+ PSH+ D LFDF +G GD FD+++ Sbjct: 247 MQNVVPSHLADFKLFDFKSINRDSGVINGGDIGFDKEE 284 >ref|ZP_06155375.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] gb|EEZ41072.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 309 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 184/280 (65%), Positives = 219/280 (78%) Query: 66 QPEVTARGSRRFELLEKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQ 125 Q E+T F L+K +RR G AI DF+MI DGD IM C+SGG DSY MLD LR LQ Sbjct: 4 QNELTKAQQYNFNKLQKKLRRNVGNAIIDFNMIEDGDRIMVCLSGGKDSYAMLDILRSLQ 63 Query: 126 TVAPVKFEIIAVNLDQKQPGFPEHILPEYFERIGVPYRIVEEDTYSIVKEKIAPGKTTCS 185 APVKFE+IAVNLDQKQPGFP+HILPEY + +GV Y+IV EDTYSIVKEKI GKTTCS Sbjct: 64 RSAPVKFELIAVNLDQKQPGFPDHILPEYLDTLGVEYKIVNEDTYSIVKEKIPEGKTTCS 123 Query: 186 LCSRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENV 245 LCSRLRRGILYR AKE+GATKIALGHHRDD+L T LNMFYGGK+K+MPPKL++D+GE+V Sbjct: 124 LCSRLRRGILYRTAKEIGATKIALGHHRDDMLETLFLNMFYGGKLKSMPPKLVSDNGEHV 183 Query: 246 VIRPLAYVREPDIKKYAAAMEFPIIPCNLCGSQPNLQRQAMREMLNQWEKTNPLWIKSMF 305 VIRPLAY RE DI+++A EFPIIPCNLCGSQPNLQRQ +++ML W++ P I++MF Sbjct: 184 VIRPLAYCREKDIERFAELKEFPIIPCNLCGSQPNLQRQVIKDMLRDWDRRYPGRIETMF 243 Query: 306 TAMANITPSHMLDRSLFDFTHFTAGAGKEAQGDTLFDRDD 345 TA+ N+ PSH+ D +LFDF T +G GD FD+ + Sbjct: 244 TALQNVVPSHLADFNLFDFKSVTKESGTIDGGDIAFDKQE 283 >ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] gb|EEO06632.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] gb|EGQ99443.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio cholerae HE39] Length = 310 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 184/278 (66%), Positives = 219/278 (78%) Query: 68 EVTARGSRRFELLEKNIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQTV 127 E+T F L+K IRR TG+AIADF+MI DGD IM C+SGG DS+TMLD L LQ Sbjct: 7 ELTKAQQYNFNKLQKRIRRNTGQAIADFNMIEDGDRIMVCLSGGKDSFTMLDILMSLQKS 66 Query: 128 APVKFEIIAVNLDQKQPGFPEHILPEYFERIGVPYRIVEEDTYSIVKEKIAPGKTTCSLC 187 AP+ FE++AVNLDQKQPGFPEH+LPEY E +GV Y+IVEEDTYSIV++K+ GKTTC+LC Sbjct: 67 APISFELVAVNLDQKQPGFPEHVLPEYLESLGVEYKIVEEDTYSIVQDKVPEGKTTCALC 126 Query: 188 SRLRRGILYRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENVVI 247 SRLRRGILYR AKELGATKIALGHHRDDIL T LNMFYGGK+K MPPKL++D+GE+VVI Sbjct: 127 SRLRRGILYRTAKELGATKIALGHHRDDILETLFLNMFYGGKMKGMPPKLVSDNGEHVVI 186 Query: 248 RPLAYVREPDIKKYAAAMEFPIIPCNLCGSQPNLQRQAMREMLNQWEKTNPLWIKSMFTA 307 RPLAY RE DI KY+ +PIIPCNLCGSQPNLQRQA+++MLN W+K P I++MF A Sbjct: 187 RPLAYCREKDIIKYSDMRGYPIIPCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRA 246 Query: 308 MANITPSHMLDRSLFDFTHFTAGAGKEAQGDTLFDRDD 345 M N+ PSH+ D SLFDF +G GD FD+++ Sbjct: 247 MQNVVPSHLADFSLFDFKSIDKNSGVINGGDIGFDKEE 284