BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.5555.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777778.1| transmembrane protein [Herbaspirillum serope... 259 1e-67 ref|YP_001893180.1| protein of unknown function DUF161 [Ralstoni... 199 1e-49 ref|YP_004214798.1| hypothetical protein Rahaq_4083 [Rahnella sp... 194 4e-48 ref|ZP_06191593.1| putative transmembrane protein [Serratia odor... 193 6e-48 ref|ZP_03830036.1| hypothetical protein PcarcW_01291 [Pectobacte... 192 1e-47 >ref|YP_003777778.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65870.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 156/172 (90%), Positives = 164/172 (95%) Query: 1 MYSQVGLLTGSTAGLAFLTHYLTGLPFGVVFFTINIPFYYFAFRRMGLRFTGKTFCAVAL 60 MY+QVGLLTGSTAGLAFL HYLTGLPFG VFFTIN+PFYYFA+RRMG RF KTFCAVAL Sbjct: 39 MYTQVGLLTGSTAGLAFLAHYLTGLPFGAVFFTINLPFYYFAWRRMGKRFMLKTFCAVAL 98 Query: 61 VSGFSLMHPHFIGYAKLDLFYSAVLGGLLMGVGFVMLFRHGASLGGINVVTLFLQDRYGL 120 VSGFSLMHP+FI Y KLDLFYSAVLGGLL+GVGFVMLFRHGASLGGINVVTLFLQDRYGL Sbjct: 99 VSGFSLMHPYFISYGKLDLFYSAVLGGLLIGVGFVMLFRHGASLGGINVVTLFLQDRYGL 158 Query: 121 RAGKLQMGVDVVIVLCSLFVVTPRVLLASILGAVTANLVIALNHRAGRYMGM 172 RAGKLQMGVDVVIVLCSL+VV P+VLLASILGAVTANL+IALNHRAGRYMGM Sbjct: 159 RAGKLQMGVDVVIVLCSLWVVAPKVLLASILGAVTANLIIALNHRAGRYMGM 210 >ref|YP_001893180.1| protein of unknown function DUF161 [Ralstonia pickettii 12J] ref|YP_002983523.1| hypothetical protein Rpic12D_3591 [Ralstonia pickettii 12D] gb|ACD29753.1| protein of unknown function DUF161 [Ralstonia pickettii 12J] gb|ACS64851.1| protein of unknown function DUF161 [Ralstonia pickettii 12D] Length = 222 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 110/169 (65%), Positives = 131/169 (77%) Query: 1 MYSQVGLLTGSTAGLAFLTHYLTGLPFGVVFFTINIPFYYFAFRRMGLRFTGKTFCAVAL 60 ++ Q GLL+G TAG+AFL HY T LPFG VFFTIN+PFYY A RRMG RFT KTFCAVAL Sbjct: 31 LFKQGGLLSGGTAGVAFLIHYATSLPFGAVFFTINLPFYYLAVRRMGWRFTCKTFCAVAL 90 Query: 61 VSGFSLMHPHFIGYAKLDLFYSAVLGGLLMGVGFVMLFRHGASLGGINVVTLFLQDRYGL 120 VS S +H HF+ L+ Y+ +GG LMGVG ++LFRH ASLGG+N+V L+LQ++YG+ Sbjct: 91 VSWLSEVHAHFVHLDTLNPLYAGAIGGTLMGVGLIVLFRHQASLGGVNIVALYLQEKYGI 150 Query: 121 RAGKLQMGVDVVIVLCSLFVVTPRVLLASILGAVTANLVIALNHRAGRY 169 RAGK QM VDV IVL SLFVV+P L AS++GAV NL IALNHR GRY Sbjct: 151 RAGKFQMAVDVGIVLTSLFVVSPMALAASLVGAVALNLSIALNHRPGRY 199 >ref|YP_004214798.1| hypothetical protein Rahaq_4083 [Rahnella sp. Y9602] gb|ADW75671.1| protein of unknown function DUF161 [Rahnella sp. Y9602] Length = 210 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 107/169 (63%), Positives = 134/169 (79%) Query: 1 MYSQVGLLTGSTAGLAFLTHYLTGLPFGVVFFTINIPFYYFAFRRMGLRFTGKTFCAVAL 60 M QVG LTG TAG+AFL HY+T + FG FF IN+PFYY +FRRMGL+FT KTF AVAL Sbjct: 40 MLRQVGALTGGTAGMAFLAHYVTQVSFGTAFFIINLPFYYLSFRRMGLQFTLKTFAAVAL 99 Query: 61 VSGFSLMHPHFIGYAKLDLFYSAVLGGLLMGVGFVMLFRHGASLGGINVVTLFLQDRYGL 120 VS FS +HP F+ + L FY+ + ++MG+GF++LFRH ASLGG+N++ LFLQD+YG+ Sbjct: 100 VSVFSDLHPLFVHFDHLQPFYATLFANVIMGIGFIVLFRHKASLGGVNILALFLQDKYGI 159 Query: 121 RAGKLQMGVDVVIVLCSLFVVTPRVLLASILGAVTANLVIALNHRAGRY 169 RAGKLQMGVD IVL SLFVV+ +L+AS+LGAV NL+IA+NHR GRY Sbjct: 160 RAGKLQMGVDCCIVLASLFVVSLEMLIASVLGAVIVNLIIAMNHRPGRY 208 >ref|ZP_06191593.1| putative transmembrane protein [Serratia odorifera 4Rx13] gb|EFA16105.1| putative transmembrane protein [Serratia odorifera 4Rx13] Length = 210 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 108/169 (63%), Positives = 134/169 (79%) Query: 1 MYSQVGLLTGSTAGLAFLTHYLTGLPFGVVFFTINIPFYYFAFRRMGLRFTGKTFCAVAL 60 + Q G LTG TAGLAFL +YLT L FGV FF +N+PFYY A RRMG FT KTFC+VAL Sbjct: 40 LLRQAGALTGGTAGLAFLINYLTPLSFGVAFFLLNLPFYYLAIRRMGWAFTVKTFCSVAL 99 Query: 61 VSGFSLMHPHFIGYAKLDLFYSAVLGGLLMGVGFVMLFRHGASLGGINVVTLFLQDRYGL 120 VS FS +HP+FI + +L FY+ V G ++MG+GF++LFRH ASLGG+N++ L+LQD+YGL Sbjct: 100 VSIFSDLHPYFIHFDRLQPFYATVFGSMIMGLGFIVLFRHKASLGGVNILALYLQDKYGL 159 Query: 121 RAGKLQMGVDVVIVLCSLFVVTPRVLLASILGAVTANLVIALNHRAGRY 169 RAGKLQM VD+ IVL SLFVV +L+ASILGA+ NL+IA+NHR GRY Sbjct: 160 RAGKLQMAVDISIVLASLFVVNISLLIASILGAMVLNLIIAMNHRPGRY 208 >ref|ZP_03830036.1| hypothetical protein PcarcW_01291 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 204 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 109/169 (64%), Positives = 135/169 (79%) Query: 1 MYSQVGLLTGSTAGLAFLTHYLTGLPFGVVFFTINIPFYYFAFRRMGLRFTGKTFCAVAL 60 + Q G LTG TAG+AFLTHYLT + FGV FF +N+PFYY A RRMG FT KTFCAV L Sbjct: 34 LLRQAGALTGGTAGIAFLTHYLTNVSFGVAFFLLNLPFYYLAVRRMGWEFTVKTFCAVGL 93 Query: 61 VSGFSLMHPHFIGYAKLDLFYSAVLGGLLMGVGFVMLFRHGASLGGINVVTLFLQDRYGL 120 VS FS +HP F+ + +L+ FY+ + G ++ G+GFV+LFRH ASLGG+N++ L+LQD+YGL Sbjct: 94 VSLFSDLHPLFVHFDQLNPFYATLFGNIITGIGFVVLFRHKASLGGMNILALYLQDKYGL 153 Query: 121 RAGKLQMGVDVVIVLCSLFVVTPRVLLASILGAVTANLVIALNHRAGRY 169 RAGKLQMGVDVVIVL SLFVV+ +L+ASILGA NL+IA+NHR GRY Sbjct: 154 RAGKLQMGVDVVIVLTSLFVVSIPMLIASILGATILNLIIAMNHRPGRY 202